BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0338400 Os09g0338400|AK098947
(458 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65720.1 | chr5:26296349-26297710 FORWARD LENGTH=454 658 0.0
AT1G08490.1 | chr1:2685980-2688547 REVERSE LENGTH=464 91 1e-18
AT1G27980.1 | chr1:9748812-9752618 FORWARD LENGTH=545 55 6e-08
>AT5G65720.1 | chr5:26296349-26297710 FORWARD LENGTH=454
Length = 453
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/409 (74%), Positives = 354/409 (86%)
Query: 50 IKGVRISGRPLYMDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLYGWESDXXXXXXXX 109
+KGVRISGRPLY+DMQATTP+DPRV DAM + YGNPHSRTHLYGWE++
Sbjct: 45 MKGVRISGRPLYLDMQATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARN 104
Query: 110 XXXSLVGADPREIFFTSGATECNNIAVKGVMRFYRDRRRHVVTTQTEHKCVLDSCRYLQQ 169
L+ A P+EI F SGATE NN+AVKGVM FY+D ++HV+TTQTEHKCVLDSCR+LQQ
Sbjct: 105 QVAKLIEASPKEIVFVSGATEANNMAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQ 164
Query: 170 EGFEVTYLPVRPDGLVDVAQLADAIRPDTGLVSVMAVNNEIGVVQPLEEIGRICKEKGVP 229
EGFEVTYLPV+ DGLVD+ L +AIRPDTGLVS+MAVNNEIGVVQP+EEIG ICKE VP
Sbjct: 165 EGFEVTYLPVKTDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIGMICKEHNVP 224
Query: 230 FHTDAAQALGKIPIDVNQMGIGLMSLSAHKIYGPKGVGALYLRRRPRIRVEPQMSGGGQE 289
FHTDAAQA+GKIP+DV + + LMS+SAHKIYGPKGVGALY+RRRPRIR+EP M+GGGQE
Sbjct: 225 FHTDAAQAIGKIPVDVKKWNVALMSMSAHKIYGPKGVGALYVRRRPRIRLEPLMNGGGQE 284
Query: 290 RGIRSGTVPTPLVVGFGAACEIAAKEMDYDHRRASVLQQRLLDGIRGQVDDIVINGSMEH 349
RG+RSGT T +VGFGAACE+A KEM+YD + LQ+RLL+G+R ++D +V+NGSM+
Sbjct: 285 RGLRSGTGATQQIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDS 344
Query: 350 RYPGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRF 409
RY GNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV+EDMAHTSIRF
Sbjct: 345 RYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF 404
Query: 410 GIGRFTTEEEVDRAIELTVHQVKKLRDMSPLYEMAKAGIDLKSIQWAQH 458
GIGRFTT+EE+D+A+ELTV QV+KLR+MSPLYEM K GID+K+IQW+QH
Sbjct: 405 GIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453
>AT1G08490.1 | chr1:2685980-2688547 REVERSE LENGTH=464
Length = 463
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 3/231 (1%)
Query: 60 LYMDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTH-LYGWESDXXXXXXXXXXXSLVGAD 118
+Y+D AT+ VLDA+ +Y N H H L +D + +D
Sbjct: 74 VYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINASD 133
Query: 119 PREIFFTSGATECNN-IAVKGVMRFYRDRRRHVVTTQTEHKCVLDSCRYLQQEGFEVTYL 177
REI FT ATE N +A + + ++T H C++ Q+ G + ++
Sbjct: 134 SREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSCIVPWQIVSQKTGAVLKFV 193
Query: 178 PVRPDGLVDVAQLADAIRPDTGLVSVMAVNNEIGVVQPLEEIGRICKEKGVPFHTDAAQA 237
+ D + D+ +L + I P T LV+V V+N + P+EEI + G DA Q+
Sbjct: 194 TLNEDEVPDINKLRELISPKTKLVAVHHVSNVLASSLPIEEIVVWAHDVGAKVLVDACQS 253
Query: 238 LGKIPIDVNQMGIGLMSLSAHKIYGPKGVGALYLRRRPRIRVEPQMSGGGQ 288
+ + +DV ++ + S+HK+ GP G+G LY + + P GGG+
Sbjct: 254 VPHMVVDVQKLNADFLVASSHKMCGPTGIGFLY-GKSDLLHSMPPFLGGGE 303
>AT1G27980.1 | chr1:9748812-9752618 FORWARD LENGTH=545
Length = 544
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 104/234 (44%), Gaps = 28/234 (11%)
Query: 125 TSGATECNNIAVKGVMRFYRDR----RRHVVTTQTEHKCVLDSCRYLQQEGFEVTYLPVR 180
TSG TE +AVK + + + R ++ ++ H + +Y + + + V PV
Sbjct: 203 TSGGTESIVLAVKSSRDYMKYKKGITRPEMIIPESGHSAYDKAAQYFKIKLWRV---PVD 259
Query: 181 PDGLVDVAQLADAIRPDTGLVSVMAVNNEIGVVQPLEEIGRICKEKGVPFHTDA------ 234
D DV I +T ++ A G++ P+EE+G++ G+ FH D
Sbjct: 260 KDFRADVKATRRHINRNTIMIVGSAPGFPHGIIDPIEELGQLALSYGICFHVDLCLGGFV 319
Query: 235 ---AQALGKI--PIDVNQMGIGLMSLSAHKIYG--PKGVGALYLR----RRPRIRVEPQM 283
A+ LG P D + G+ +S+ HK YG PKG + R R+ + +
Sbjct: 320 LPFARKLGYQIPPFDFSVQGVTSISVDVHK-YGLAPKGTSTVLYRNHEIRKHQFVAVTEW 378
Query: 284 SGGGQERGIRSGTVPTPLVVGFGAACEIAAKEMDYDHRRASVLQ--QRLLDGIR 335
SGG +G+ P LV G AA ++ E Y + +++ +RL +G+R
Sbjct: 379 SGGLYVSPTIAGSRPGSLVAGAWAAM-MSLGEEGYLQNTSKIMEASKRLEEGVR 431
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,556,472
Number of extensions: 353612
Number of successful extensions: 745
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,310,137
Effective search space: 2958408772
Effective search space used: 2958408772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)