FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0324200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.023) R2 : 0.00206
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.047 (0.0484) R2dN8 : 0.00266 R2N8 : 0.00206
σ : 0.433
deviance : 86.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.73 0.422 3.1 0.129 0.0898 0.39 0.335 -0.0764 0.106 13.4 0.4341 4078 -- --
80.73 0.418 3.1 0.135 0.0912 0.37 0.335 -- 0.106 13.4 0.449 4021 -- --
81.1 0.419 3.11 0.121 0.0954 0.45 -- -0.405 0.1 12 0.4721 3973 -- --
81.11 0.419 3.1 0.144 0.0958 0.359 -- -- 0.105 11.9 0.4514 4020 -- --
81.67 0.421 3.11 0.119 -- 0.452 -- -0.394 0.105 -- 0.4618 3978 -- --
83.49 0.428 3.11 0.252 0.0874 -- 0.269 -- 0.0759 13 -- -- -- --
83.74 0.429 3.11 0.261 0.0907 -- -- -- 0.0767 11.7 -- -- -- --
81.68 0.421 3.1 0.148 -- 0.358 -- -- 0.107 -- 0.4369 4026 -- --
81.63 0.421 3.1 -- 0.0914 0.362 -- -- 0.105 11.8 0.7109 4072 -- --
84.26 0.429 3.11 0.258 -- -- -- -- 0.0756 -- -- -- -- --
85.54 0.433 3.11 -- 0.0877 -- -- -- 0.0477 11.5 -- -- -- --
82.2 0.422 3.1 -- -- 0.377 -- -- 0.0887 -- 0.7591 4042 -- --
86.02 0.433 3.11 -- -- -- -- -- 0.047 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.77 temperature 25.0 10 < th dose dependent rect. 11 1
9 74.53 wind 7.0 270 > th dose independent rect. 8 1
13 75.27 wind 5.0 270 > th dose dependent rect. 8 1
36 77.76 radiation 10.0 1440 < th dose dependent rect. 21 1
39 77.82 temperature 20.0 30 > th dose dependent rect. 20 1
41 77.83 humidity 80.0 30 > th dose independent rect. 20 1
42 77.83 atmosphere 1005.0 30 > th dose dependent rect. 20 1
47 77.86 humidity 70.0 30 > th dose dependent rect. 20 1
48 77.87 wind 3.0 30 > th dose independent rect. 20 1
51 77.90 temperature 10.0 1440 > th dose independent rect. 21 1
54 77.90 temperature 30.0 1440 < th dose independent rect. 21 1
58 77.90 humidity 50.0 1440 > th dose independent rect. 21 1
64 77.90 atmosphere 1005.0 30 > th dose independent rect. 20 1
65 77.90 atmosphere 995.0 1440 > th dose independent rect. 21 1
66 77.90 radiation 1.0 1440 < th dose independent rect. 21 1
86 77.90 temperature 10.0 1440 > th dose independent rect. 22 23
92 77.93 temperature 20.0 30 > th dose independent rect. 20 1
96 77.97 wind 5.0 30 < th dose independent rect. 20 1
103 78.00 humidity 90.0 90 > th dose dependent rect. 16 2
106 78.01 temperature 10.0 30 > th dose independent rect. 20 1
108 78.01 temperature 30.0 30 < th dose independent rect. 20 1
109 78.01 humidity 50.0 30 > th dose independent rect. 20 1
113 78.01 atmosphere 1010.0 30 < th dose independent rect. 20 1
115 78.01 radiation 1.0 30 < th dose independent rect. 20 1
120 78.01 precipitation 0.1 30 < th dose independent rect. 20 1
121 78.01 humidity 90.0 90 > th dose independent rect. 16 2
122 78.01 temperature 10.0 30 > th dose independent rect. 21 23
124 78.01 radiation 1.0 30 < th dose dependent rect. 20 1
130 78.01 precipitation 0.1 30 < th dose dependent rect. 20 1
134 78.04 wind 9.0 30 < th dose dependent rect. 20 1
137 78.07 wind 1.0 30 > th dose dependent rect. 20 1
144 78.09 temperature 25.0 10 < th dose dependent rect. 8 5
158 78.17 temperature 20.0 90 < th dose independent rect. 16 1
160 78.17 temperature 20.0 30 < th dose dependent rect. 16 2
188 78.23 humidity 90.0 30 < th dose independent rect. 20 1
209 78.37 atmosphere 1015.0 30 < th dose dependent rect. 20 1
235 78.62 humidity 90.0 30 < th dose dependent rect. 20 1
247 78.69 temperature 30.0 30 < th dose dependent rect. 20 1
249 78.71 temperature 20.0 90 < th dose dependent rect. 12 6
304 79.00 wind 9.0 30 < th dose independent rect. 21 23
306 79.01 temperature 25.0 10 < th dose independent rect. 12 1
328 79.19 wind 9.0 1440 < th dose independent rect. 21 1
433 79.78 temperature 20.0 270 < th dose independent rect. 12 6
439 79.82 wind 3.0 10 < th dose independent rect. 18 1
462 79.93 radiation 40.0 90 < th dose independent rect. 10 17
479 79.99 temperature 10.0 90 > th dose dependent rect. 19 8
509 80.09 wind 1.0 1440 > th dose independent rect. 13 8
527 80.14 temperature 30.0 270 < th dose dependent rect. 9 9
543 80.18 temperature 15.0 90 > th dose dependent rect. 3 16
554 80.20 wind 5.0 90 < th dose independent rect. 19 8
608 80.32 atmosphere 995.0 90 > th dose independent rect. 3 16
638 80.39 wind 3.0 90 < th dose dependent rect. 17 1
651 80.41 precipitation 0.1 1440 > th dose dependent rect. 17 2
663 80.42 temperature 10.0 720 > th dose dependent rect. 3 12
665 80.43 wind 1.0 4320 > th dose independent rect. 18 3
675 80.43 radiation 30.0 10 < th dose dependent rect. 21 23
681 80.44 precipitation 0.1 1440 > th dose dependent rect. 17 11
685 80.45 radiation 1.0 270 < th dose dependent rect. 10 6
696 80.47 temperature 25.0 720 < th dose independent rect. 6 6
701 80.48 wind 3.0 90 < th dose independent rect. 17 1
711 80.49 temperature 10.0 90 > th dose independent rect. 19 8
712 80.49 temperature 30.0 90 < th dose independent rect. 19 8
713 80.49 humidity 50.0 90 > th dose independent rect. 19 8
715 80.49 atmosphere 995.0 90 > th dose independent rect. 19 8
716 80.49 radiation 1.0 90 < th dose independent rect. 19 8
721 80.49 temperature 10.0 90 > th dose independent rect. 3 16
722 80.49 atmosphere 1015.0 90 < th dose independent rect. 3 16
725 80.49 temperature 10.0 720 > th dose dependent rect. 7 8
726 80.49 radiation 1.0 90 < th dose dependent rect. 19 8
732 80.49 temperature 20.0 720 > th dose dependent rect. 3 12
734 80.50 precipitation 0.1 1440 < th dose independent rect. 17 2
737 80.50 precipitation 0.1 1440 < th dose dependent rect. 17 2
741 80.50 temperature 10.0 10 > th dose dependent rect. 20 7
743 80.50 wind 1.0 1440 < th dose dependent rect. 13 8
749 80.51 wind 1.0 1440 < th dose independent rect. 13 8
750 80.51 temperature 20.0 720 > th dose dependent rect. 8 1
755 80.52 precipitation 0.1 1440 < th dose independent rect. 17 10
759 80.52 precipitation 0.1 1440 < th dose dependent rect. 17 10
764 80.53 precipitation 0.1 90 < th dose independent rect. 3 16
772 80.53 precipitation 0.1 90 < th dose dependent rect. 3 16
774 80.54 wind 9.0 90 < th dose independent rect. 3 16
801 80.57 radiation 20.0 720 > th dose independent rect. 6 1
803 80.57 precipitation 0.1 1440 > th dose independent rect. 17 2
837 80.59 wind 5.0 90 < th dose independent rect. 3 16
847 80.60 temperature 20.0 270 > th dose independent rect. 7 18
876 80.62 humidity 50.0 90 > th dose dependent rect. 19 8
878 80.62 humidity 90.0 90 > th dose dependent rect. 9 9
898 80.64 temperature 20.0 270 > th dose independent rect. 7 16
918 80.66 radiation 20.0 90 < th dose independent rect. 3 16
920 80.66 precipitation 0.1 4320 > th dose dependent rect. 15 5
932 80.67 radiation 20.0 10 < th dose independent rect. 21 23
933 80.67 humidity 90.0 14400 > th dose dependent rect. 21 1
938 80.67 radiation 30.0 10 < th dose dependent rect. 3 23
953 80.69 radiation 40.0 270 < th dose independent rect. 7 7
962 80.69 precipitation 0.1 1440 > th dose dependent rect. 17 18
966 80.70 humidity 80.0 90 > th dose independent rect. 17 10
967 80.70 precipitation 0.1 1440 > th dose independent rect. 17 11
980 80.70 wind 9.0 90 < th dose dependent rect. 3 16
983 80.71 wind 5.0 1440 > th dose independent rect. 3 1
984 80.71 humidity 90.0 14400 > th dose independent rect. 21 1
989 80.71 radiation 40.0 10 < th dose independent rect. 3 7
990 80.71 precipitation 0.1 90 < th dose independent rect. 19 8
991 80.71 radiation 20.0 10 < th dose independent rect. 3 17
998 80.71 precipitation 0.1 90 < th dose dependent rect. 19 8