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Os09g0322200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nudix hydrolase 20, chloroplast precursor (EC 3.6.1.-) (AtNUDT20).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0143) R2 : 0.0271
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.107 (0.03) R2dN8 : 0.0351 R2N8 : 0.0271
σ : 0.269
deviance : 33.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.45 0.185 9.8 -0.823 0.165 -0.0858 0.27 -1.79 0.0375 14.8 0.3584 4617 -- --
16.68 0.19 9.81 -0.683 0.168 -0.238 0.197 -- 0.0892 14.9 0.6883 12301 -- --
15.65 0.184 9.8 -0.813 0.171 -0.0797 -- -1.76 0.0392 15.4 0.2401 4618 -- --
16.79 0.191 9.81 -0.715 0.159 -0.238 -- -- 0.0846 15.3 1 12301 -- --
17.29 0.194 9.8 -0.819 -- -0.0822 -- -1.72 0.0346 -- 0.2453 4618 -- --
18.38 0.201 9.82 -0.704 0.158 -- 0.217 -- 0.0316 14.9 -- -- -- --
18.5 0.201 9.82 -0.699 0.163 -- -- -- 0.0332 15.5 -- -- -- --
18.21 0.199 9.81 -0.715 -- -0.253 -- -- 0.0769 -- 1 12340 -- --
29.04 0.251 9.79 -- 0.173 -0.282 -- -- 0.177 15.6 0.4998 13069 -- --
19.99 0.209 9.82 -0.706 -- -- -- -- 0.0288 -- -- -- -- --
31.37 0.262 9.81 -- 0.177 -- -- -- 0.111 15.5 -- -- -- --
30.68 0.258 9.79 -- -- -0.289 -- -- 0.175 -- 0.4867 13069 -- --
33.12 0.269 9.8 -- -- -- -- -- 0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.72 precipitation 0.1 14400 < th dose independent rect. 19 1
2 14.72 precipitation 0.1 14400 < th dose dependent rect. 19 1
3 14.73 wind 5.0 14400 < th dose dependent rect. 2 2
4 14.74 precipitation 0.1 14400 > th dose independent rect. 19 1
5 14.77 wind 3.0 14400 < th dose independent rect. 22 6
6 14.85 wind 3.0 14400 > th dose independent rect. 22 6
8 14.85 wind 5.0 4320 < th dose dependent rect. 21 3
11 14.88 precipitation 0.1 14400 > th dose dependent rect. 19 1
14 14.91 wind 3.0 4320 < th dose independent rect. 21 4
16 14.91 precipitation 0.1 4320 > th dose dependent rect. 21 20
17 14.92 precipitation 0.1 4320 > th dose independent rect. 21 20
19 14.93 precipitation 0.1 4320 < th dose independent rect. 21 20
20 14.93 precipitation 0.1 4320 > th dose independent rect. 19 22
21 14.93 precipitation 0.1 4320 < th dose independent rect. 19 22
24 14.93 precipitation 0.1 4320 < th dose dependent rect. 21 20
25 14.93 precipitation 0.1 4320 < th dose dependent rect. 19 22
29 14.97 wind 1.0 14400 > th dose dependent rect. 2 2
31 14.97 wind 1.0 14400 > th dose dependent rect. 23 5
39 15.00 wind 3.0 4320 > th dose independent rect. 21 4
41 15.01 wind 3.0 4320 < th dose independent rect. 19 6
46 15.02 wind 1.0 4320 > th dose dependent rect. 21 3
47 15.02 wind 7.0 14400 < th dose dependent rect. 23 5
69 15.07 wind 9.0 14400 > th dose independent rect. 7 4
76 15.09 wind 9.0 14400 > th dose independent rect. 9 2
85 15.09 wind 5.0 4320 < th dose dependent rect. 19 9
100 15.12 wind 3.0 4320 < th dose independent rect. 19 9
104 15.13 wind 3.0 4320 > th dose independent rect. 19 6
109 15.13 wind 5.0 14400 < th dose dependent rect. 21 8
111 15.14 wind 9.0 14400 < th dose independent rect. 7 4
141 15.16 wind 9.0 14400 > th dose dependent rect. 10 1
148 15.18 wind 3.0 4320 > th dose independent rect. 18 10
152 15.18 wind 5.0 4320 < th dose dependent rect. 19 7
174 15.20 precipitation 0.1 4320 > th dose dependent rect. 2 15
214 15.24 precipitation 0.1 4320 > th dose independent rect. 2 15
220 15.24 precipitation 0.1 4320 > th dose dependent rect. 6 8
251 15.27 precipitation 0.1 4320 < th dose independent rect. 2 15
258 15.27 precipitation 0.1 4320 < th dose dependent rect. 2 15
289 15.30 wind 9.0 14400 > th dose dependent rect. 6 5
312 15.31 precipitation 0.1 4320 > th dose dependent rect. 9 8
317 15.32 wind 3.0 14400 > th dose independent rect. 24 2
361 15.33 precipitation 0.1 4320 > th dose dependent rect. 18 9
373 15.35 precipitation 0.1 4320 > th dose independent rect. 7 7
450 15.40 precipitation 0.1 4320 < th dose independent rect. 7 7
465 15.40 precipitation 0.1 4320 < th dose dependent rect. 7 7
487 15.42 wind 7.0 14400 < th dose independent rect. 12 1
507 15.43 wind 7.0 14400 > th dose independent rect. 12 1
522 15.43 wind 1.0 14400 > th dose dependent rect. 22 15
532 15.44 wind 1.0 4320 > th dose dependent rect. 19 9
552 15.46 precipitation 0.1 14400 > th dose independent rect. 17 1
556 15.46 precipitation 0.1 4320 > th dose independent rect. 9 8
557 15.46 precipitation 0.1 4320 > th dose independent rect. 6 11
561 15.46 precipitation 0.1 4320 > th dose independent rect. 2 22
562 15.46 precipitation 0.1 4320 < th dose independent rect. 2 22
563 15.46 precipitation 0.1 4320 > th dose dependent sin 7 NA
573 15.46 precipitation 0.1 4320 < th dose dependent rect. 2 22
601 15.48 precipitation 0.1 4320 < th dose independent rect. 6 11
612 15.48 precipitation 0.1 4320 < th dose dependent rect. 6 11
616 15.49 precipitation 0.1 4320 > th dose independent sin 4 NA
622 15.49 precipitation 0.1 4320 < th dose independent rect. 8 9
632 15.49 precipitation 0.1 4320 < th dose dependent rect. 8 9
638 15.50 precipitation 0.1 14400 < th dose independent rect. 17 1
641 15.50 precipitation 0.1 4320 > th dose independent rect. 11 6
654 15.50 precipitation 0.1 14400 < th dose dependent rect. 17 1
668 15.51 precipitation 0.1 4320 < th dose independent sin 5 NA
678 15.51 precipitation 0.1 4320 < th dose dependent sin 5 NA
696 15.52 humidity 80.0 14400 > th dose independent rect. 14 2
712 15.52 wind 1.0 4320 > th dose dependent rect. 19 6
717 15.52 wind 9.0 14400 < th dose dependent rect. 22 15
721 15.53 precipitation 0.1 4320 < th dose independent rect. 11 6
731 15.53 wind 3.0 43200 < th dose independent rect. 19 14
734 15.53 precipitation 0.1 4320 > th dose independent rect. 12 23
735 15.53 precipitation 0.1 4320 < th dose independent rect. 12 23
741 15.53 precipitation 0.1 4320 > th dose dependent rect. 18 6
742 15.53 precipitation 0.1 4320 < th dose dependent rect. 11 6
753 15.53 precipitation 0.1 4320 < th dose dependent rect. 12 23
754 15.54 precipitation 0.1 4320 > th dose independent no NA NA
756 15.54 precipitation 0.1 4320 < th dose independent no NA NA
776 15.54 precipitation 0.1 4320 > th dose independent rect. 9 23
777 15.54 precipitation 0.1 4320 > th dose independent rect. 21 23
778 15.54 precipitation 0.1 4320 < th dose independent rect. 9 23
780 15.54 precipitation 0.1 4320 < th dose independent rect. 21 23
783 15.54 precipitation 0.1 4320 < th dose dependent no NA NA
799 15.54 precipitation 0.1 4320 < th dose dependent rect. 9 23
801 15.54 precipitation 0.1 4320 < th dose dependent rect. 21 23
802 15.55 wind 3.0 4320 < th dose independent sin 13 NA
825 15.55 precipitation 0.1 4320 > th dose independent rect. 15 23
828 15.55 precipitation 0.1 4320 < th dose independent rect. 15 23
842 15.55 precipitation 0.1 4320 < th dose dependent rect. 15 23
854 15.56 precipitation 0.1 4320 > th dose independent rect. 5 23
858 15.56 precipitation 0.1 4320 < th dose independent rect. 5 23
870 15.56 precipitation 0.1 4320 < th dose dependent rect. 5 23
872 15.57 wind 3.0 4320 > th dose independent sin 13 NA
873 15.57 wind 3.0 43200 < th dose independent sin 10 NA
916 15.58 humidity 80.0 14400 < th dose independent rect. 14 1