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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0309200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Calmodulin binding protein-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0271) R2 : 0.00561
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0917 (0.0571) R2dN8 : 0.00725 R2N8 : 0.00561
σ : 0.511
deviance : 119.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.89 0.474 3.3 -0.05 0.436 -1.07 -0.697 -3.15 0.0919 0.512 19.74 4532 -- --
104.81 0.48 3.38 -0.0729 0.417 0.372 -0.653 -- 0.0919 0.487 19.74 4532 -- --
103.95 0.475 3.31 -0.029 0.44 -1.06 -- -3.13 0.0925 0.578 19.5 4533 -- --
104.81 0.48 3.38 -0.0565 0.419 1.2 -- -- 0.0865 0.627 14.66 3084 -- --
115.99 0.502 3.29 -0.0278 -- -1.24 -- -3.5 0.103 -- 19.4 4535 -- --
105.58 0.482 3.38 -0.129 0.437 -- -0.689 -- 0.0712 0.501 -- -- -- --
107.61 0.486 3.38 -0.103 0.439 -- -- -- 0.0744 0.597 -- -- -- --
115.72 0.503 3.37 -0.0331 -- 1.43 -- -- 0.096 -- 14.66 3084 -- --
104.89 0.48 3.37 -- 0.418 1.23 -- -- 0.093 0.621 14.66 3084 -- --
119.71 0.511 3.37 -0.0872 -- -- -- -- 0.082 -- -- -- -- --
107.89 0.486 3.38 -- 0.438 -- -- -- 0.0859 0.586 -- -- -- --
115.75 0.503 3.37 -- -- 1.45 -- -- 0.0998 -- 14.66 3084 -- --
119.91 0.511 3.37 -- -- -- -- -- 0.0917 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.14 atmosphere 1005.0 30 > th dose independent rect. 2 1
2 101.20 radiation 1.0 720 > th dose independent rect. 17 12
3 101.21 wind 3.0 30 < th dose independent rect. 2 1
4 101.22 temperature 15.0 30 > th dose independent rect. 11 23
5 101.22 atmosphere 1000.0 30 > th dose dependent rect. 2 1
6 101.24 temperature 25.0 30 < th dose independent rect. 2 1
8 101.26 temperature 20.0 30 > th dose dependent rect. 2 1
9 101.27 radiation 1.0 720 > th dose independent rect. 17 2
19 101.27 radiation 1.0 720 > th dose independent rect. 16 14
24 101.30 humidity 60.0 43200 > th dose independent rect. 8 1
25 101.31 wind 9.0 30 < th dose independent rect. 2 1
26 101.31 temperature 10.0 30 > th dose independent rect. 2 1
29 101.31 humidity 50.0 30 > th dose independent rect. 2 1
33 101.31 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 101.31 radiation 1.0 30 < th dose independent rect. 2 1
40 101.31 precipitation 0.1 30 < th dose independent rect. 2 1
41 101.31 temperature 10.0 30 > th dose independent rect. 3 23
42 101.31 wind 5.0 30 < th dose dependent rect. 2 1
45 101.31 radiation 1.0 30 < th dose dependent rect. 2 1
50 101.31 precipitation 0.1 30 < th dose dependent rect. 2 1
54 101.33 humidity 50.0 30 > th dose dependent rect. 2 1
56 101.34 atmosphere 1015.0 14400 > th dose dependent rect. 13 5
57 101.35 humidity 50.0 14400 > th dose independent rect. 20 14
60 101.36 wind 1.0 14400 > th dose independent rect. 11 2
61 101.36 atmosphere 1015.0 14400 > th dose independent rect. 14 2
62 101.36 humidity 50.0 14400 > th dose independent rect. 23 11
64 101.36 humidity 60.0 14400 < th dose dependent rect. 20 13
67 101.37 humidity 50.0 14400 > th dose independent rect. 3 7
68 101.37 humidity 50.0 14400 > th dose independent rect. 1 9
70 101.37 humidity 60.0 14400 < th dose dependent rect. 7 2
83 101.39 humidity 50.0 14400 > th dose independent rect. 7 3
84 101.40 humidity 60.0 43200 < th dose independent rect. 8 1
85 101.40 humidity 50.0 14400 > th dose independent rect. 18 16
87 101.40 humidity 50.0 43200 > th dose dependent rect. 22 1
121 101.44 wind 1.0 14400 < th dose independent rect. 11 2
129 101.46 humidity 50.0 43200 > th dose independent rect. 10 3
130 101.46 humidity 50.0 43200 > th dose independent rect. 4 10
138 101.46 humidity 50.0 14400 < th dose dependent sin 8 NA
139 101.46 humidity 50.0 14400 < th dose dependent rect. 13 1
146 101.47 humidity 50.0 14400 < th dose dependent rect. 9 3
178 101.48 wind 9.0 1440 > th dose independent rect. 12 1
180 101.48 atmosphere 1015.0 14400 < th dose independent rect. 15 5
182 101.48 humidity 50.0 43200 < th dose independent rect. 4 10
221 101.49 atmosphere 1015.0 14400 > th dose dependent rect. 12 8
239 101.50 humidity 50.0 43200 < th dose independent rect. 9 5
271 101.52 humidity 50.0 14400 < th dose independent rect. 11 1
296 101.52 wind 1.0 14400 < th dose dependent rect. 5 1
297 101.52 temperature 30.0 30 < th dose dependent rect. 2 1
315 101.54 humidity 50.0 43200 > th dose independent sin 5 NA
329 101.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
356 101.55 humidity 90.0 90 < th dose independent rect. 21 10
407 101.59 humidity 50.0 43200 < th dose independent sin 5 NA
447 101.61 humidity 50.0 43200 < th dose independent rect. 13 1
485 101.62 humidity 90.0 43200 < th dose dependent rect. 22 1
500 101.63 wind 9.0 1440 > th dose dependent rect. 12 1
548 101.64 humidity 50.0 14400 < th dose dependent no NA NA
671 101.65 humidity 80.0 720 < th dose independent rect. 17 2
676 101.65 wind 1.0 43200 < th dose independent rect. 8 16
684 101.66 wind 1.0 43200 < th dose independent rect. 10 4
700 101.67 precipitation 0.1 1440 > th dose dependent rect. 10 4
701 101.67 radiation 1.0 720 < th dose dependent rect. 10 6
703 101.68 wind 1.0 30 > th dose independent rect. 2 1
743 101.70 atmosphere 1015.0 43200 < th dose independent rect. 9 1
758 101.71 atmosphere 1015.0 43200 > th dose independent rect. 9 1
762 101.71 temperature 20.0 14400 < th dose dependent rect. 6 1
763 101.71 atmosphere 1015.0 43200 > th dose dependent rect. 10 1
777 101.72 radiation 1.0 720 < th dose independent rect. 10 6
786 101.72 humidity 80.0 720 > th dose dependent rect. 11 9
804 101.73 radiation 1.0 720 < th dose dependent rect. 13 3
846 101.74 atmosphere 1015.0 43200 < th dose independent rect. 7 9