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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0307300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Targeting for Xklp2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.032) R2 : 0.00812
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.13 (0.0674) R2dN8 : 0.0105 R2N8 : 0.00812
σ : 0.603
deviance : 166.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.82 0.59 2.96 0.962 0.0387 -0.99 0.368 10.5 -0.0629 6.07 30.2 206 -- --
166 0.605 3.06 0.11 0.0622 0.0525 -0.205 -- -0.114 1.58 30.2 206 -- --
158.02 0.585 2.96 0.957 0.0517 -0.995 -- 10.4 -0.0644 2.56 30.19 203 -- --
165.39 0.599 3.08 0.115 0.0227 0.127 -- -- -0.169 0.952 29.24 18932 -- --
158.18 0.586 2.96 0.956 -- -1.01 -- 10.3 -0.0676 -- 30.2 205 -- --
166.08 0.604 3.07 0.115 0.0519 -- -0.219 -- -0.119 1.48 -- -- -- --
166.27 0.604 3.06 0.122 0.0519 -- -- -- -0.117 1.08 -- -- -- --
165.07 0.598 3.09 0.00862 -- 0.232 -- -- -0.231 -- 28.38 19496 -- --
165.17 0.599 3.08 -- 0.0613 0.186 -- -- -0.206 1.5 29.3 19021 -- --
166.44 0.603 3.06 0.124 -- -- -- -- -0.116 -- -- -- -- --
166.67 0.604 3.07 -- 0.054 -- -- -- -0.131 1.17 -- -- -- --
165.01 0.598 3.09 -- -- 0.228 -- -- -0.228 -- 28.31 18935 -- --
166.85 0.603 3.07 -- -- -- -- -- -0.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.54 temperature 20 10 < th dose independent sin 23 NA
2 151.63 temperature 20 10 > th dose independent sin 23 NA
3 151.91 wind 1 90 < th dose dependent rect. 4 1
4 152.66 wind 1 90 < th dose independent rect. 4 1
8 153.20 temperature 20 10 < th dose independent rect. 6 14
9 153.25 temperature 20 10 < th dose independent rect. 4 17
14 153.88 atmosphere 1000 90 < th dose dependent rect. 11 3
15 153.94 atmosphere 1000 90 < th dose independent rect. 12 1
17 154.02 atmosphere 1000 90 < th dose dependent rect. 12 1
18 154.02 humidity 50 90 < th dose dependent rect. 13 2
20 154.10 humidity 50 90 < th dose independent rect. 13 2
24 154.14 atmosphere 1000 10 < th dose dependent rect. 12 2
31 154.33 atmosphere 1000 90 < th dose independent rect. 11 4
60 155.65 atmosphere 1000 90 < th dose independent rect. 9 6
70 156.04 humidity 80 90 < th dose dependent rect. 6 1
83 156.41 humidity 80 90 < th dose independent rect. 6 1
85 156.45 atmosphere 1000 270 < th dose independent rect. 10 1
91 156.60 temperature 20 10 < th dose independent rect. 24 21
94 156.65 atmosphere 1000 90 < th dose independent rect. 7 8
97 156.68 temperature 30 270 > th dose dependent sin 8 NA
101 156.76 atmosphere 1000 270 < th dose dependent rect. 10 1
107 156.85 temperature 30 270 > th dose independent sin 5 NA
135 157.25 temperature 30 270 < th dose independent sin 5 NA
139 157.30 temperature 30 270 > th dose dependent rect. 8 5
159 157.36 temperature 30 270 > th dose dependent rect. 9 2
162 157.38 temperature 30 90 > th dose dependent rect. 12 3
222 157.52 temperature 30 90 > th dose dependent rect. 15 23
232 157.66 temperature 30 270 > th dose independent rect. 18 22
233 157.68 humidity 80 10 < th dose dependent rect. 19 13
239 157.73 temperature 20 90 < th dose independent rect. 5 4
240 157.73 temperature 20 90 < th dose independent rect. 5 10
245 157.74 temperature 20 90 < th dose independent rect. 5 6
254 157.78 temperature 30 270 > th dose independent rect. 8 8
293 157.88 temperature 20 10 < th dose independent rect. 6 2
301 157.91 temperature 30 90 > th dose dependent sin 2 NA
304 157.94 atmosphere 1000 720 > th dose independent rect. 3 8
309 157.95 temperature 30 30 > th dose dependent rect. 12 23
325 158.04 temperature 20 10 < th dose independent rect. 4 5
327 158.04 temperature 20 10 < th dose independent rect. 6 10
329 158.05 temperature 20 10 < th dose independent rect. 6 8
407 158.28 temperature 30 270 > th dose independent rect. 15 22
484 158.44 temperature 20 10 < th dose independent rect. 19 14
506 158.47 temperature 30 90 > th dose dependent no NA NA
609 158.49 wind 1 270 < th dose dependent rect. 8 15
619 158.50 atmosphere 1000 90 < th dose independent sin 0 NA
677 158.57 temperature 30 270 > th dose independent no NA NA
836 158.68 temperature 30 270 < th dose independent no NA NA
841 158.70 atmosphere 1000 90 > th dose independent sin 0 NA
843 158.70 atmosphere 1000 90 < th dose independent rect. 3 13
859 158.77 temperature 30 30 > th dose independent rect. 13 3
886 158.81 atmosphere 1000 10 < th dose dependent rect. 4 11
895 158.85 temperature 20 10 > th dose independent rect. 3 23
953 158.93 temperature 30 270 > th dose independent rect. 9 2
959 158.94 temperature 20 10 < th dose independent rect. 19 21
965 158.95 temperature 20 10 < th dose independent rect. 16 17
971 158.96 temperature 20 10 < th dose independent rect. 14 19
974 158.96 temperature 30 30 > th dose independent rect. 13 22
982 158.97 atmosphere 1015 720 < th dose dependent rect. 8 6