BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0307300 Os09g0307300|AK066404
(164 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179 68 3e-12
AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489 63 7e-11
AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520 57 6e-09
>AT5G37478.1 | chr5:14881560-14883799 FORWARD LENGTH=179
Length = 178
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 63 KRRSPTSQTSPKRSSPKHEQPLSYFRLHTEERAIKRAGFNYQVASKINTNEIIRRFEEKL 122
K ++ T++ K + ++++PL F+LH+ ERA+KRA FNY VA+ ++ ++ EE+L
Sbjct: 47 KTKAATTKNITKAPAKENKKPLE-FKLHSGERAVKRAMFNYSVATNYYIQKLQKKQEERL 105
Query: 123 SKVXXXXXXXXXXXXXVHKAQLMPAFDKPFHPQR 156
K+ V KAQLMP FD+PF PQR
Sbjct: 106 QKMIEEEEIRMLRKEMVPKAQLMPFFDRPFLPQR 139
>AT3G01015.1 | chr3:1798-4017 REVERSE LENGTH=489
Length = 488
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 12 SSMTSSTGPKSPVRNGGSPPHKKSTSEFRGRKNESQILRKGGQDSITLDESKRRSPTSQ- 70
+SM S K ++ P K T E RGR E + +K + +TL+++K+R P +Q
Sbjct: 293 ASMGSRRSTKKQIKVTSLKPFKLRTEE-RGRMKEEEFAKKLHE--MTLEKAKKRIPIAQG 349
Query: 71 -----TSPKRSSPKHEQPLSY---FRLHTEERAIKRAGFNYQVASKINTNEIIRRFEEKL 122
P+ H + ++ +LH++ RA++RA F+YQV KIN E + E+
Sbjct: 350 LPWTTDEPENLVKPHVKDITIPVDLKLHSDIRAVERAEFDYQVTEKINLVEQYKTERERQ 409
Query: 123 SKVXXXXXXXXXXXXXVHKAQLMPAFDKPFHPQR 156
K+ V KAQ MP FD+PF P+R
Sbjct: 410 QKLAEEEEIRRLRKELVPKAQPMPYFDRPFIPKR 443
>AT5G15510.2 | chr5:5034120-5036588 FORWARD LENGTH=520
Length = 519
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 37 SEFRGRKNESQILRKGGQDSITLDESKRRSPTSQTSPKRSS-PK-----HEQPLSY---F 87
+E RG+ E ++ +K + IT++E K R P +Q P + P+ H + ++
Sbjct: 327 TEQRGKVKEEELAKKIHE--ITMEEEKMRIPIAQGLPWTTDEPECLVKPHWKDITRPVDL 384
Query: 88 RLHTEERAIKRAGFNYQVASKINTNEIIRRFEEKLSKVXXXXXXXXXXXXXVHKAQLMPA 147
LH++ RA++RA F+YQVA K++ E + E+ K+ V KAQ MP
Sbjct: 385 TLHSDVRAVERAEFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRKELVPKAQPMPY 444
Query: 148 FDKPFHPQR 156
FD+PF P+R
Sbjct: 445 FDRPFIPRR 453
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.124 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,323,904
Number of extensions: 126461
Number of successful extensions: 545
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 3
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)