Os09g0306700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochrome and flowering time 1 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0306700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Phytochrome and flowering time 1 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.89 | 0.181 | 13 | 1.11 | 0.394 | -0.452 | 0.0555 | -0.929 | 0.51 | 20.3 | 22.76 | 329 | -- | -- |
| 15.66 | 0.184 | 13 | 1.02 | 0.401 | -0.258 | 0.116 | -- | 0.483 | 20.3 | 25.17 | 236 | -- | -- |
| 14.89 | 0.18 | 13 | 1.11 | 0.394 | -0.453 | -- | -0.938 | 0.51 | 20.2 | 22.68 | 355 | -- | -- |
| 15.7 | 0.185 | 13 | 1.02 | 0.399 | -0.255 | -- | -- | 0.48 | 20.4 | 25.6 | 201 | -- | -- |
| 21.76 | 0.217 | 13 | 1.08 | -- | -0.476 | -- | -0.652 | 0.472 | -- | 30.1 | 585 | -- | -- |
| 16.6 | 0.191 | 13 | 1.09 | 0.413 | -- | 0.133 | -- | 0.534 | 20 | -- | -- | -- | -- |
| 16.65 | 0.191 | 13 | 1.08 | 0.413 | -- | -- | -- | 0.534 | 20 | -- | -- | -- | -- |
| 22.14 | 0.219 | 13 | 0.964 | -- | -0.499 | -- | -- | 0.456 | -- | 53.56 | 585 | -- | -- |
| 22.63 | 0.222 | 13.1 | -- | 0.408 | -0.805 | -- | -- | 0.173 | 19.9 | 61.85 | 47520 | -- | -- |
| 25.98 | 0.238 | 13 | 1.08 | -- | -- | -- | -- | 0.529 | -- | -- | -- | -- | -- |
| 47.62 | 0.323 | 13 | -- | 0.407 | -- | -- | -- | 0.414 | 20.2 | -- | -- | -- | -- |
| 30.64 | 0.258 | 13.1 | -- | -- | -0.837 | -- | -- | 0.198 | -- | 22.81 | 47520 | -- | -- |
| 56.74 | 0.352 | 13 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 2 | 14.15 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 3 | 14.20 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 7 | 14.31 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 9 | 14.36 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 18 | 14.48 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 25 | 14.56 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 26 | 14.57 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 27 | 14.58 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 29 | 14.60 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 30 | 14.60 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 32 | 14.63 | wind | 5.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 33 | 14.64 | wind | 1.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 34 | 14.64 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 40 | 14.66 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 47 | 14.68 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 48 | 14.69 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 49 | 14.70 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 50 | 14.70 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 51 | 14.70 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 12 | 10 |
| 52 | 14.70 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 53 | 14.70 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 20 |
| 54 | 14.70 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 59 | 14.71 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 69 | 14.71 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 70 | 14.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 90 | 14.74 | wind | 5.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 113 | 14.75 | wind | 5.0 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 129 | 14.77 | wind | 5.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 138 | 14.78 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 143 | 14.78 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 159 | 14.80 | wind | 7.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 160 | 14.80 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 161 | 14.80 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 162 | 14.80 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 7 |
| 178 | 14.81 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 215 | 14.83 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 227 | 14.84 | wind | 5.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 299 | 14.89 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 22 |
| 333 | 14.92 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 345 | 14.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 353 | 14.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 357 | 14.93 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 366 | 14.94 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 399 | 14.96 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 420 | 14.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 450 | 14.99 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 477 | 15.00 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 542 | 15.04 | wind | 5.0 | 4320 | > th | dose independent | no | NA | NA |
| 554 | 15.04 | wind | 5.0 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 580 | 15.06 | wind | 5.0 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 584 | 15.06 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 589 | 15.06 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 610 | 15.08 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 636 | 15.09 | wind | 5.0 | 4320 | < th | dose independent | no | NA | NA |
| 657 | 15.09 | wind | 5.0 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 664 | 15.10 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 679 | 15.10 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 710 | 15.11 | wind | 5.0 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 713 | 15.11 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 725 | 15.11 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 732 | 15.12 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 733 | 15.12 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 798 | 15.13 | temperature | 20.0 | 720 | < th | dose independent | rect. | 7 | 15 |
| 815 | 15.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 830 | 15.13 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 835 | 15.14 | temperature | 20.0 | 4320 | > th | dose independent | sin | 20 | NA |
| 852 | 15.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 893 | 15.15 | temperature | 20.0 | 4320 | < th | dose independent | sin | 20 | NA |
| 896 | 15.15 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 900 | 15.15 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 918 | 15.15 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 937 | 15.16 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 952 | 15.16 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 9 | 8 |