BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0306700 Os09g0306700|J033048B12
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25540.1  | chr1:8969392-8974446 REVERSE LENGTH=837             99   1e-21

>AT1G25540.1 | chr1:8969392-8974446 REVERSE LENGTH=837
          Length = 836

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 61/96 (63%)

Query: 63  LGPYWPVTVADYVEKIVRSFCAHEMAGQKLAGTPPELALVVFHTHGPYSAFCVQRSGWTK 122
           LGPYW   V+DY+EKI+RSFC  E+ G++   +  EL+LV+F++HG Y A  VQRSGWT+
Sbjct: 18  LGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSYCACLVQRSGWTR 77

Query: 123 DMNVFLSWLXXXXXXXXXXXXXXXXXXLAEALMVLT 158
           D+++FL WL                  LAEALM+ +
Sbjct: 78  DVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.138    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,188,929
Number of extensions: 60618
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)