Os09g0281600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SWAP/Surp domain containing protein.
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Os09g0281600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SWAP/Surp domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.51 | 0.251 | 12.9 | -0.896 | 0.288 | -0.747 | -0.872 | 1.22 | 0.215 | 12.1 | 25.68 | 23 | -- | -- |
| 28.93 | 0.252 | 13 | -1.03 | 0.281 | -0.639 | -0.76 | -- | 0.179 | 11.8 | 25.83 | 26 | -- | -- |
| 31.4 | 0.263 | 13 | -1.04 | 0.29 | -0.675 | -- | 0.102 | 0.177 | 11.7 | 25.92 | 23 | -- | -- |
| 31.41 | 0.263 | 13 | -1.05 | 0.289 | -0.666 | -- | -- | 0.175 | 11.7 | 25.92 | 23 | -- | -- |
| 35.33 | 0.277 | 13 | -1.1 | -- | -0.476 | -- | -0.117 | 0.153 | -- | 26.35 | 67 | -- | -- |
| 36.19 | 0.282 | 13 | -1.11 | 0.159 | -- | -0.807 | -- | 0.151 | 10.7 | -- | -- | -- | -- |
| 38.02 | 0.289 | 13 | -1.15 | 0.214 | -- | -- | -- | 0.145 | 8.21 | -- | -- | -- | -- |
| 35.32 | 0.277 | 13 | -1.08 | -- | -0.478 | -- | -- | 0.158 | -- | 26.24 | 78 | -- | -- |
| 59.72 | 0.362 | 12.9 | -- | 0.371 | -0.921 | -- | -- | 0.3 | 12.5 | 25.92 | 23 | -- | -- |
| 40.53 | 0.297 | 13 | -1.15 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 72.81 | 0.399 | 12.9 | -- | 0.209 | -- | -- | -- | 0.273 | 8.61 | -- | -- | -- | -- |
| 65.53 | 0.377 | 12.9 | -- | -- | -0.581 | -- | -- | 0.339 | -- | 23.12 | 263 | -- | -- |
| 75.27 | 0.405 | 12.9 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.41 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 27.47 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 5 | 27.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 11 | 27.64 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 27.69 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 24 | 28.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 25 | 28.08 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 52 | 28.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 13 |
| 127 | 28.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 187 | 28.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 334 | 28.94 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 427 | 29.11 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 481 | 29.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 543 | 29.52 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 550 | 29.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 563 | 29.57 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 574 | 29.61 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 620 | 29.71 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 632 | 29.76 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 652 | 29.81 | humidity | 90 | 720 | < th | dose independent | rect. | 24 | 20 |
| 677 | 29.87 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 8 |
| 682 | 29.88 | radiation | 10 | 720 | < th | dose independent | rect. | 21 | 11 |
| 693 | 29.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 707 | 29.94 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 735 | 29.97 | humidity | 80 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 740 | 29.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 762 | 30.04 | humidity | 90 | 720 | < th | dose independent | rect. | 5 | 15 |
| 784 | 30.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 790 | 30.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 796 | 30.09 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 808 | 30.10 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 8 |
| 828 | 30.12 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 21 |
| 858 | 30.16 | humidity | 90 | 720 | < th | dose independent | sin | 1 | NA |
| 900 | 30.21 | humidity | 60 | 720 | > th | dose dependent | rect. | 21 | 19 |