BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0281600 Os09g0281600|AK067020
         (289 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52120.1  | chr3:19329243-19331738 FORWARD LENGTH=444          313   6e-86

>AT3G52120.1 | chr3:19329243-19331738 FORWARD LENGTH=444
          Length = 443

 Score =  313 bits (803), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 163/307 (53%), Positives = 195/307 (63%), Gaps = 20/307 (6%)

Query: 2   TVKQVADKLANFVAKNGRQFENVTRQRNPGDTPFKFLFDKNCSDYKYYEFRLAEEEMLLA 61
           TVK+VADKLA+FVAK+GR FE++TRQ+NPGDTPFKFLFD+NC+DYKYY FRLAEEE L++
Sbjct: 138 TVKKVADKLASFVAKHGRPFEHITRQKNPGDTPFKFLFDENCADYKYYVFRLAEEEKLIS 197

Query: 62  QSKEAQXXXXXXXXXXXXXXXXXXXXXXFEQKTNYQTPASAL----------XXXXXXXX 111
           Q+K++                       ++Q T YQ PASAL                  
Sbjct: 198 QTKDSGVLHSGDAGSRTSTAAIPLQKPAYQQ-TGYQIPASALYDTPVEPGASSRSAQASI 256

Query: 112 XXXXXXXXXEPPK--DPVALMEFYMKKAAQEERKRPPKQSKDEMPPPPSLQAPS------ 163
                      P+  DP+++MEFYMKKAAQEE+ R P+QSKDEMPPP SLQ PS      
Sbjct: 257 TRPSDSDSFSGPRGADPLSMMEFYMKKAAQEEKMRRPRQSKDEMPPPASLQGPSETSSTD 316

Query: 164 -SKKGHHMGDFIPQEELEKFMARCNDXXXXXXXXXXXXXXXXXXDNIGHKLLSKMXXXXX 222
             K+GHHMGD+IP EEL+KF+++CND                  DN+GHKLLSKM     
Sbjct: 317 PGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEAAEKAKIQADNVGHKLLSKMGWKEG 376

Query: 223 XXXXXXXXXXADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRYRPNPLN 282
                     ADPIMAGDVK ++LGVGA  PGEV  EDDIYEQYKKRMMLGY++RPNPL 
Sbjct: 377 EGIGSSRKGMADPIMAGDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLG 436

Query: 283 NPRKAYY 289
           NPRKAYY
Sbjct: 437 NPRKAYY 443



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,175,554
Number of extensions: 188723
Number of successful extensions: 856
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)