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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0279100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.9 (0.0248) R2 : 0.336
β1 : 1.37 (0.0907) R2dD : 0.345 R2D : 0.333
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0697 (0.0529) R2dN8 : 0.00339 R2N8 : -0.00883
σ : 0.465
deviance : 98.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.25 0.439 5.88 1.36 0.216 0.563 -0.35 -1.03 0.158 11.4 90.5 259 -- --
88.15 0.437 5.88 1.34 0.205 0.79 -0.397 -- 0.118 10.2 93.85 206 -- --
87.76 0.436 5.88 1.34 0.217 0.571 -- -0.964 0.157 11.3 90.69 261 -- --
88.52 0.438 5.88 1.35 0.206 1.1 -- -- 0.122 10.1 94.54 209 -- --
90.59 0.443 5.89 1.34 -- 0.568 -- -1 0.153 -- 90.86 276 -- --
93.62 0.454 5.89 1.38 0.295 -- -0.377 -- 0.0664 8.33 -- -- -- --
94.06 0.454 5.89 1.37 0.296 -- -- -- 0.0663 8.24 -- -- -- --
90.99 0.444 5.88 1.34 -- 1.22 -- -- 0.125 -- 94.5 238 -- --
134.56 0.54 5.9 -- 0.202 0.872 -- -- 0.0252 11.7 92.72 253 -- --
98.91 0.465 5.9 1.37 -- -- -- -- 0.0697 -- -- -- -- --
143.35 0.56 5.92 -- 0.305 -- -- -- -0.086 7.91 -- -- -- --
136.88 0.545 5.91 -- -- 0.892 -- -- 0.00808 -- 93 270 -- --
148.4 0.569 5.93 -- -- -- -- -- -0.0823 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.53 atmosphere 1005.0 90 > th dose dependent rect. 2 2
2 83.99 radiation 1.0 1440 > th dose independent rect. 10 3
4 84.18 wind 9.0 14400 < th dose independent rect. 6 4
5 84.21 atmosphere 1005.0 10 > th dose dependent rect. 2 3
6 84.23 radiation 1.0 1440 > th dose independent rect. 12 1
13 84.72 humidity 60.0 270 > th dose dependent rect. 19 12
23 85.11 humidity 90.0 270 < th dose independent rect. 23 12
26 85.23 humidity 60.0 14400 > th dose independent rect. 20 8
28 85.25 temperature 20.0 270 > th dose independent rect. 3 3
33 85.34 radiation 1.0 1440 < th dose independent rect. 11 1
34 85.34 radiation 1.0 1440 < th dose dependent rect. 11 1
38 85.44 humidity 80.0 270 > th dose dependent rect. 3 3
40 85.49 temperature 10.0 43200 > th dose independent rect. 13 7
42 85.57 radiation 1.0 1440 < th dose independent rect. 9 4
43 85.57 radiation 1.0 1440 < th dose dependent rect. 9 4
49 85.65 humidity 90.0 90 < th dose independent rect. 2 3
50 85.66 humidity 90.0 10 < th dose dependent rect. 2 3
54 85.73 atmosphere 1000.0 30 > th dose independent rect. 5 13
72 85.88 humidity 90.0 270 < th dose independent sin 8 NA
98 86.05 humidity 80.0 90 > th dose dependent rect. 5 2
103 86.07 atmosphere 995.0 43200 > th dose independent sin 19 NA
106 86.08 humidity 80.0 90 < th dose dependent rect. 24 6
108 86.09 temperature 15.0 270 > th dose independent rect. 6 21
110 86.10 humidity 80.0 90 < th dose independent rect. 24 6
111 86.10 humidity 80.0 270 > th dose dependent sin 9 NA
114 86.10 radiation 20.0 30 < th dose dependent rect. 5 13
121 86.12 temperature 20.0 270 > th dose independent rect. 2 5
122 86.12 humidity 80.0 90 < th dose dependent rect. 24 3
128 86.13 atmosphere 1000.0 43200 < th dose dependent rect. 8 7
141 86.16 atmosphere 995.0 43200 < th dose independent sin 19 NA
149 86.17 atmosphere 995.0 43200 < th dose dependent rect. 14 9
154 86.19 atmosphere 995.0 43200 < th dose independent rect. 11 13
157 86.20 radiation 40.0 14400 > th dose independent rect. 7 1
174 86.20 radiation 40.0 14400 > th dose dependent rect. 7 1
193 86.21 atmosphere 995.0 43200 > th dose independent rect. 12 11
194 86.21 atmosphere 995.0 43200 < th dose independent rect. 12 11
195 86.21 atmosphere 995.0 43200 > th dose independent rect. 9 16
196 86.21 humidity 60.0 30 > th dose dependent rect. 5 4
199 86.22 atmosphere 995.0 43200 > th dose independent rect. 11 13
210 86.26 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
212 86.26 wind 3.0 30 < th dose dependent rect. 5 4
214 86.27 atmosphere 995.0 43200 > th dose independent rect. 1 18
232 86.29 temperature 10.0 43200 > th dose independent rect. 15 5
234 86.29 atmosphere 995.0 43200 < th dose independent rect. 9 16
240 86.29 atmosphere 995.0 43200 > th dose independent rect. 5 20
243 86.29 wind 9.0 270 < th dose dependent rect. 6 21
245 86.30 temperature 20.0 30 > th dose independent rect. 5 4
247 86.30 wind 5.0 90 < th dose independent rect. 9 19
252 86.31 humidity 90.0 270 > th dose independent rect. 22 9
271 86.34 atmosphere 995.0 43200 < th dose independent rect. 1 18
272 86.34 atmosphere 995.0 43200 < th dose independent rect. 8 18
286 86.37 wind 3.0 90 < th dose dependent rect. 5 2
335 86.44 humidity 90.0 270 > th dose independent rect. 3 3
357 86.46 temperature 15.0 30 > th dose independent rect. 9 20
396 86.49 wind 9.0 270 < th dose independent rect. 6 21
403 86.51 temperature 20.0 4320 < th dose independent rect. 12 5
418 86.53 temperature 15.0 90 > th dose independent rect. 18 10
485 86.61 atmosphere 995.0 43200 < th dose dependent rect. 13 11
488 86.62 radiation 20.0 10 < th dose independent rect. 5 4
502 86.65 atmosphere 995.0 43200 > th dose independent sin 4 NA
508 86.66 wind 1.0 1440 > th dose independent rect. 23 10
521 86.68 atmosphere 995.0 43200 > th dose independent rect. 13 9
546 86.70 radiation 40.0 30 < th dose dependent rect. 5 4
550 86.71 atmosphere 995.0 43200 < th dose dependent rect. 12 14
560 86.74 atmosphere 995.0 43200 < th dose dependent sin 17 NA
575 86.75 radiation 20.0 1440 < th dose dependent rect. 11 2
578 86.76 precipitation 0.1 270 < th dose independent rect. 6 21
583 86.76 precipitation 0.1 270 < th dose dependent rect. 6 21
586 86.77 atmosphere 1000.0 270 > th dose independent rect. 3 3
587 86.77 temperature 20.0 4320 > th dose independent rect. 13 5
602 86.78 humidity 60.0 14400 < th dose independent rect. 6 1
604 86.78 humidity 60.0 14400 < th dose independent rect. 20 1
606 86.78 radiation 20.0 14400 > th dose independent rect. 17 1
662 86.78 humidity 60.0 14400 < th dose dependent rect. 6 1
664 86.78 humidity 60.0 14400 < th dose dependent rect. 20 1
666 86.78 radiation 20.0 14400 > th dose dependent rect. 17 1
720 86.78 humidity 90.0 270 > th dose dependent rect. 10 21
722 86.79 wind 7.0 270 < th dose independent rect. 17 10
728 86.79 wind 9.0 90 < th dose dependent rect. 9 19
729 86.80 wind 1.0 1440 > th dose independent rect. 3 4
732 86.80 radiation 20.0 30 < th dose independent rect. 5 13
759 86.82 atmosphere 995.0 43200 < th dose independent sin 5 NA
781 86.83 atmosphere 995.0 43200 < th dose dependent rect. 11 16
798 86.85 atmosphere 995.0 43200 < th dose dependent rect. 12 21
806 86.86 temperature 10.0 43200 > th dose independent rect. 4 20
820 86.87 humidity 50.0 43200 > th dose independent rect. 4 3
826 86.88 temperature 20.0 4320 < th dose independent rect. 14 4
830 86.88 humidity 90.0 270 > th dose dependent rect. 14 17
832 86.89 humidity 90.0 270 > th dose independent sin 8 NA
833 86.89 wind 9.0 270 < th dose independent rect. 3 3
834 86.89 temperature 10.0 270 > th dose independent rect. 3 3
836 86.89 temperature 30.0 270 < th dose independent rect. 3 3
837 86.89 humidity 50.0 270 > th dose independent rect. 3 3
841 86.89 atmosphere 1015.0 270 < th dose independent rect. 3 3
842 86.89 radiation 20.0 270 < th dose independent rect. 3 3
854 86.89 humidity 50.0 30 > th dose dependent rect. 5 13
855 86.89 humidity 90.0 270 > th dose dependent rect. 21 19
857 86.90 radiation 40.0 4320 < th dose independent rect. 4 4
861 86.90 wind 5.0 30 < th dose independent rect. 18 11
877 86.91 atmosphere 995.0 43200 < th dose dependent rect. 14 20
888 86.92 radiation 40.0 270 < th dose dependent rect. 3 3
895 86.93 temperature 20.0 30 > th dose independent rect. 3 6
897 86.93 wind 1.0 1440 < th dose independent rect. 23 10
898 86.93 temperature 30.0 30 < th dose independent rect. 18 11
902 86.93 wind 9.0 10 < th dose independent rect. 9 20
921 86.94 wind 9.0 14400 < th dose independent rect. 23 11
934 86.95 humidity 60.0 30 > th dose independent rect. 18 11
942 86.95 radiation 1.0 30 < th dose dependent rect. 18 11
947 86.96 radiation 40.0 4320 < th dose independent rect. 6 2
959 86.97 temperature 10.0 43200 > th dose independent rect. 4 6
966 86.97 wind 1.0 720 > th dose independent rect. 15 21
976 86.98 humidity 50.0 43200 > th dose independent rect. 6 1
981 86.98 wind 1.0 90 > th dose independent rect. 7 22
992 86.99 radiation 1.0 30 < th dose independent rect. 18 11
996 86.99 temperature 10.0 43200 < th dose independent rect. 4 20