BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0279100 Os09g0279100|J065053G08
         (102 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32850.2  | chr2:13935448-13937977 REVERSE LENGTH=671          113   2e-26
AT1G54510.1  | chr1:20358603-20362006 REVERSE LENGTH=613           47   2e-06

>AT2G32850.2 | chr2:13935448-13937977 REVERSE LENGTH=671
          Length = 670

 Score =  113 bits (283), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 55/61 (90%)

Query: 27  ALGCLLYRICYLKSAFDGESKLQILNGNYRIPELPKYSSPITSLIKDMLQSSPDVRPDIT 86
           ALGCLL+RICY K+AFDGESKLQILNGNYRIPE PKYS  IT LIK+MLQ+SPD RPDIT
Sbjct: 229 ALGCLLFRICYFKNAFDGESKLQILNGNYRIPESPKYSVFITDLIKEMLQASPDERPDIT 288

Query: 87  Q 87
           Q
Sbjct: 289 Q 289



>AT1G54510.1 | chr1:20358603-20362006 REVERSE LENGTH=613
          Length = 612

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 27  ALGCLLYRICYLK---SAFDGESKLQILNGNYRIPELPKYSSPITSLIKDMLQSSPDVRP 83
           +LGC +Y + YLK    AFD ++ +  +N     P   KYS P   L+K ML+ +P+VRP
Sbjct: 188 SLGCCIYEMAYLKPAFKAFDMQALINKINKTIVSPLPAKYSGPFRGLVKSMLRKNPEVRP 247

Query: 84  DIT 86
             +
Sbjct: 248 SAS 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,261,176
Number of extensions: 85190
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)