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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0268600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0555) R2 : 0.26
β1 : 1.55 (0.239) R2dD : 0.117 R2D : -0.0428
β2 : 1.24 (0.129) R2dC : 0.15 R2C : 0.113
β3 : 0.637 (0.221) R2dE : 0.021 R2E : -0.0239
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.63 (0.686) R2dD*E : 0.0979 R2D*E : -0.13
γ1 : 0.586 (0.12) R2dN8 : 0.0651 R2N8 : 0.00875
σ : 0.948
deviance : 414.7
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_____
C
peak time of C : 7.97
E
wheather : temperature
threshold : 20.51
memory length : 1392
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
400.41 0.94 3.41 1.4 1.3 0.543 3.08 3.34 0.584 8.11 20.3 596 -- --
422.37 0.957 3.46 0.885 1.18 0.396 2.51 -- 0.599 7.91 31.4 1193 -- --
414.7 0.948 3.4 1.55 1.24 0.637 -- 3.63 0.586 7.97 20.51 1392 -- --
431.63 0.968 3.47 0.857 1.27 0.452 -- -- 0.593 7.94 31.5 2571 -- --
495.56 1.04 3.4 1.58 -- 0.774 -- 3.86 0.601 -- 20.57 2930 -- --
429.61 0.972 3.49 0.905 1.22 -- 1.95 -- 0.496 8.07 -- -- -- --
440.98 0.983 3.49 0.958 1.22 -- -- -- 0.493 7.94 -- -- -- --
514.04 1.06 3.49 0.974 -- 0.498 -- -- 0.608 -- 31.1 5865 -- --
449 0.987 3.48 -- 1.25 0.615 -- -- 0.546 7.95 31.3 2600 -- --
522.34 1.07 3.52 0.971 -- -- -- -- 0.509 -- -- -- -- --
465.19 1.01 3.51 -- 1.23 -- -- -- 0.387 7.89 -- -- -- --
531.63 1.07 3.53 -- -- 0.576 -- -- 0.485 -- 31.7 5849 -- --
547.21 1.09 3.55 -- -- -- -- -- 0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 398.37 temperature 30 720 < th dose dependent rect. 19 12
2 398.78 temperature 30 720 < th dose dependent rect. 18 14
5 399.03 temperature 20 720 > th dose independent rect. 17 19
7 399.07 temperature 25 720 < th dose dependent rect. 22 3
8 399.08 humidity 90 90 > th dose independent rect. 22 14
16 399.50 temperature 25 720 < th dose dependent rect. 20 7
17 399.51 humidity 90 30 > th dose dependent rect. 3 22
24 399.81 temperature 30 720 < th dose dependent sin 12 NA
30 400.08 temperature 20 270 > th dose independent rect. 24 11
38 400.31 temperature 10 720 > th dose dependent rect. 24 3
40 400.37 temperature 20 720 > th dose independent rect. 8 22
41 400.42 temperature 30 720 < th dose dependent rect. 13 19
42 400.45 humidity 90 90 > th dose independent rect. 22 9
47 400.52 temperature 20 270 < th dose independent rect. 20 15
48 400.52 temperature 10 1440 > th dose dependent rect. 20 1
56 400.63 temperature 30 1440 < th dose dependent rect. 20 1
62 400.78 temperature 20 720 < th dose independent rect. 4 20
66 400.83 temperature 10 720 > th dose dependent rect. 17 19
67 400.84 temperature 20 270 > th dose independent rect. 23 22
74 400.94 temperature 20 720 < th dose independent rect. 16 14
82 401.00 temperature 20 720 < th dose independent sin 13 NA
83 401.01 humidity 80 90 > th dose dependent rect. 22 13
85 401.04 temperature 20 270 < th dose dependent rect. 22 11
171 401.64 temperature 20 270 > th dose independent sin 7 NA
203 401.83 temperature 10 720 > th dose dependent rect. 18 17
210 401.85 humidity 70 30 > th dose dependent rect. 3 9
220 401.91 temperature 20 270 < th dose independent sin 7 NA
227 401.94 temperature 20 720 < th dose independent rect. 9 21
241 402.01 humidity 90 30 > th dose dependent rect. 23 11
272 402.18 humidity 90 270 < th dose independent rect. 22 11
276 402.19 temperature 20 720 < th dose independent rect. 12 22
289 402.26 temperature 20 270 > th dose independent rect. 2 15
326 402.44 temperature 20 720 > th dose independent no NA NA
337 402.49 humidity 90 90 > th dose independent sin 8 NA
340 402.52 humidity 90 30 > th dose dependent rect. 23 9
352 402.55 temperature 20 720 > th dose independent rect. 21 23
357 402.57 temperature 20 4320 > th dose independent rect. 20 4
423 402.82 radiation 40 30 < th dose dependent rect. 12 15
469 402.98 humidity 90 30 > th dose independent rect. 3 22
484 403.04 temperature 20 720 < th dose independent no NA NA
491 403.06 temperature 20 720 < th dose independent rect. 20 23
509 403.15 humidity 90 30 > th dose dependent rect. 23 7
580 403.39 temperature 20 720 < th dose independent rect. 20 7
584 403.40 humidity 90 270 < th dose independent sin 8 NA
598 403.44 temperature 20 720 > th dose independent sin 9 NA
675 403.66 temperature 20 4320 < th dose independent rect. 20 4
704 403.74 humidity 80 270 > th dose dependent sin 9 NA
728 403.82 humidity 90 90 < th dose independent rect. 24 14
750 403.90 temperature 20 270 < th dose dependent sin 9 NA
794 404.01 temperature 20 720 < th dose independent rect. 20 5
814 404.06 radiation 20 30 < th dose independent rect. 12 15
895 404.27 temperature 10 720 > th dose dependent rect. 23 6