BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0268600 Os09g0268600|AK100020
         (440 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64260.1  | chr1:23847756-23849915 FORWARD LENGTH=720           61   1e-09

>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
          Length = 719

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 33/263 (12%)

Query: 20  PDCEHRYCKRHLLANMATAGYRGEKYKSFVDSAVYAYTEYDYNRAMDALKAFNAKAWKWL 79
           P   H++C  HL +      +R    +S V+ A     + +++  M+ +K  N +AWKWL
Sbjct: 463 PWAHHKFCLNHLRSQFLGV-FRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWL 521

Query: 80  NYLGKEXXXXXXXXXXXXTDLVVNN--LSEVFNN--YIIELRDKPIVTMLDKIRQKL--- 132
           + + +               + ++   L  V     Y        ++ M D++R      
Sbjct: 522 DQIPRHKWALAHDSGLRYGIIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKS 581

Query: 133 -----------MVRANQKRDGGQQAMWEITPVVVGKLEVEKKYARYCNAYQSGVGLWEIL 181
                      +V      D  ++ M +  P V+ +LE         ++++         
Sbjct: 582 LSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLER--------DSFKVSES----- 628

Query: 182 GSERQYEVNLFSRTCGCNKWQLTGIPCKHAVTAIFAAKERPEDYVDEHFRKEAYLRAYAP 241
             + ++ V L   TC C K+Q    PC HA+      K  P  YVDE +  E Y + YA 
Sbjct: 629 SEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAA 688

Query: 242 VIYPVPGEHDW-TTTDSPDIDPP 263
              PVP    W      P + PP
Sbjct: 689 TFSPVPDVAAWPEDCRVPTLFPP 711



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,663,875
Number of extensions: 409383
Number of successful extensions: 1221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)