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Os09g0266400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PGAP1-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0131) R2 : 0.816
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.24 (0.0275) R2dN8 : 1.05 R2N8 : 0.816
σ : 0.246
deviance : 27.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.66 0.197 10.3 0.263 0.22 0.366 -0.427 0.00872 -1.17 4.93 91.76 361 -- --
17.66 0.196 10.3 0.264 0.22 0.365 -0.425 -- -1.17 4.93 91.74 358 -- --
17.98 0.198 10.3 0.291 0.236 0.33 -- -0.343 -1.17 5.16 91.94 333 -- --
18.1 0.198 10.3 0.268 0.232 0.329 -- -- -1.17 5.15 91.83 360 -- --
19.81 0.207 10.3 0.262 -- 0.483 -- -0.241 -1.14 -- 90.56 318 -- --
19.35 0.206 10.3 0.292 0.338 -- -0.264 -- -1.22 5.3 -- -- -- --
19.52 0.207 10.3 0.292 0.337 -- -- -- -1.21 5.37 -- -- -- --
19.88 0.208 10.3 0.251 -- 0.477 -- -- -1.14 -- 90.38 345 -- --
19.94 0.208 10.3 -- 0.217 0.352 -- -- -1.19 4.99 91 375 -- --
25.44 0.236 10.4 0.304 -- -- -- -- -1.21 -- -- -- -- --
21.77 0.218 10.4 -- 0.342 -- -- -- -1.25 5.34 -- -- -- --
21.51 0.216 10.3 -- -- 0.484 -- -- -1.16 -- 89.63 348 -- --
27.87 0.246 10.4 -- -- -- -- -- -1.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.16 temperature 25.0 1440 < th dose independent rect. 18 10
2 17.17 temperature 25.0 1440 < th dose independent rect. 19 6
5 17.19 temperature 25.0 1440 < th dose independent rect. 20 2
20 17.25 temperature 25.0 1440 > th dose independent rect. 18 10
23 17.26 temperature 25.0 1440 > th dose independent rect. 19 6
36 17.30 wind 9.0 14400 > th dose independent rect. 10 2
59 17.34 wind 7.0 14400 > th dose dependent rect. 11 1
65 17.37 temperature 25.0 1440 < th dose independent sin 12 NA
75 17.39 wind 7.0 14400 < th dose independent rect. 11 1
89 17.42 wind 9.0 14400 < th dose independent rect. 10 3
93 17.43 temperature 25.0 10 > th dose independent sin 10 NA
114 17.47 temperature 25.0 1440 > th dose independent sin 12 NA
115 17.47 atmosphere 1005.0 14400 < th dose independent rect. 11 1
128 17.48 wind 3.0 14400 < th dose dependent rect. 21 1
138 17.50 atmosphere 1005.0 14400 > th dose independent rect. 11 1
146 17.51 atmosphere 1005.0 14400 > th dose independent rect. 6 1
159 17.52 wind 9.0 4320 > th dose dependent rect. 18 3
173 17.55 radiation 1.0 1440 > th dose independent rect. 12 1
174 17.55 wind 1.0 43200 < th dose independent rect. 19 2
181 17.55 wind 7.0 4320 > th dose independent rect. 17 12
183 17.55 wind 7.0 4320 > th dose dependent rect. 17 12
193 17.56 temperature 25.0 10 > th dose independent rect. 17 17
195 17.57 atmosphere 1005.0 14400 < th dose independent rect. 6 1
214 17.59 atmosphere 1005.0 14400 < th dose independent rect. 3 1
227 17.59 atmosphere 1015.0 270 < th dose dependent rect. 21 10
238 17.60 wind 7.0 4320 > th dose independent rect. 18 10
246 17.61 atmosphere 1005.0 14400 < th dose independent rect. 3 4
254 17.61 wind 9.0 4320 > th dose independent rect. 16 15
278 17.62 temperature 25.0 1440 > th dose dependent rect. 20 3
294 17.63 wind 7.0 4320 < th dose independent rect. 17 12
313 17.64 atmosphere 1005.0 14400 > th dose independent rect. 4 8
318 17.64 temperature 25.0 10 > th dose independent rect. 17 13
334 17.65 wind 9.0 4320 < th dose independent rect. 16 17
337 17.65 atmosphere 1015.0 90 < th dose dependent rect. 21 12
373 17.67 wind 9.0 4320 < th dose independent rect. 16 15
377 17.67 temperature 25.0 1440 > th dose dependent rect. 19 6
379 17.67 atmosphere 1010.0 10 < th dose dependent rect. 14 18
404 17.68 temperature 20.0 1440 > th dose dependent rect. 24 1
408 17.69 wind 7.0 4320 > th dose independent rect. 17 4
422 17.69 atmosphere 1005.0 14400 < th dose independent rect. 2 10
509 17.71 temperature 20.0 1440 > th dose dependent rect. 4 1
518 17.71 atmosphere 1010.0 90 < th dose dependent rect. 23 10
527 17.72 wind 7.0 14400 < th dose independent rect. 6 1
550 17.72 temperature 20.0 10 > th dose dependent sin 9 NA
562 17.73 radiation 1.0 1440 < th dose independent rect. 12 1
567 17.73 atmosphere 995.0 14400 > th dose independent rect. 9 4
587 17.73 radiation 1.0 1440 < th dose dependent rect. 12 1
598 17.74 wind 9.0 4320 > th dose independent sin 12 NA
639 17.75 wind 7.0 4320 < th dose independent rect. 17 4
647 17.75 wind 7.0 4320 > th dose independent rect. 20 8
678 17.75 atmosphere 1010.0 10 < th dose dependent rect. 19 14
679 17.75 humidity 90.0 270 > th dose dependent rect. 4 22
687 17.76 wind 7.0 4320 < th dose independent rect. 20 8
708 17.76 precipitation 0.1 14400 > th dose dependent rect. 17 1
739 17.77 wind 7.0 4320 > th dose dependent sin 12 NA
752 17.78 atmosphere 1005.0 14400 > th dose independent sin 5 NA
783 17.78 wind 9.0 4320 > th dose dependent rect. 20 9
789 17.78 temperature 20.0 10 > th dose dependent rect. 20 14
823 17.79 atmosphere 1010.0 10 < th dose dependent rect. 22 10
832 17.80 atmosphere 1005.0 14400 < th dose independent sin 5 NA
876 17.81 precipitation 0.1 14400 < th dose independent rect. 17 1
897 17.81 precipitation 0.1 14400 < th dose dependent rect. 17 1
938 17.82 temperature 25.0 1440 > th dose dependent sin 12 NA
964 17.83 precipitation 0.1 14400 > th dose independent rect. 17 1
1000 17.83 temperature 20.0 10 > th dose independent rect. 12 23