Os09g0266000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear transport factor 2 domain containing protein.
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Os09g0266000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear transport factor 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.62 | 0.324 | 12.2 | -0.402 | 0.204 | 0.223 | 0.000795 | 2.29 | -0.752 | 1.65 | 0.3326 | 4767 | -- | -- |
| 48.17 | 0.323 | 12.2 | -0.504 | 0.177 | 0.438 | -0.0689 | -- | -0.795 | 1.55 | 1.951 | 7060 | -- | -- |
| 47.62 | 0.321 | 12.2 | -0.402 | 0.204 | 0.223 | -- | 2.29 | -0.752 | 1.65 | 0.3326 | 4767 | -- | -- |
| 48.17 | 0.323 | 12.2 | -0.492 | 0.18 | 0.457 | -- | -- | -0.803 | 1.64 | 1.629 | 7060 | -- | -- |
| 50.15 | 0.33 | 12.2 | -0.398 | -- | 0.231 | -- | 2.21 | -0.749 | -- | 0.4148 | 4767 | -- | -- |
| 53.25 | 0.342 | 12.2 | -0.576 | 0.192 | -- | -0.0621 | -- | -0.735 | 1.55 | -- | -- | -- | -- |
| 53.26 | 0.342 | 12.2 | -0.574 | 0.192 | -- | -- | -- | -0.735 | 1.62 | -- | -- | -- | -- |
| 50.14 | 0.33 | 12.2 | -0.495 | -- | 0.462 | -- | -- | -0.804 | -- | 1.5 | 7060 | -- | -- |
| 53.09 | 0.339 | 12.2 | -- | 0.208 | 0.735 | -- | -- | -0.739 | 1.43 | 2.564 | 2260 | -- | -- |
| 55.53 | 0.348 | 12.2 | -0.566 | -- | -- | -- | -- | -0.73 | -- | -- | -- | -- | -- |
| 61.95 | 0.368 | 12.1 | -- | 0.182 | -- | -- | -- | -0.671 | 1.52 | -- | -- | -- | -- |
| 55.31 | 0.346 | 12.2 | -- | -- | 0.733 | -- | -- | -0.736 | -- | 0.5 | 2260 | -- | -- |
| 63.99 | 0.373 | 12.1 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.03 | wind | 5.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 2 | 45.12 | wind | 5.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 5 | 45.33 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 6 | 45.35 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 7 | 45.35 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 15 | 45.44 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 16 | 45.45 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 22 | 45.48 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 29 | 45.55 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 34 | 45.57 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 37 | 45.58 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 38 | 45.58 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 39 | 45.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 43 | 45.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 53 | 45.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 67 | 45.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 86 | 45.73 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 103 | 45.77 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 104 | 45.77 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 115 | 45.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 135 | 45.87 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 137 | 45.88 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 166 | 45.96 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 193 | 46.02 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 195 | 46.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 197 | 46.03 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 198 | 46.03 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 203 | 46.04 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 216 | 46.06 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 229 | 46.08 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 235 | 46.09 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 238 | 46.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 257 | 46.12 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 285 | 46.15 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 300 | 46.16 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 12 |
| 301 | 46.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 303 | 46.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 306 | 46.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 316 | 46.18 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 15 | 10 |
| 346 | 46.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 352 | 46.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 404 | 46.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 412 | 46.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 423 | 46.31 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 442 | 46.32 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 443 | 46.33 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 456 | 46.34 | temperature | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 464 | 46.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 483 | 46.36 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 492 | 46.37 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 533 | 46.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 537 | 46.41 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 596 | 46.44 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 605 | 46.45 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 622 | 46.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 655 | 46.47 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 674 | 46.48 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 695 | 46.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 696 | 46.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 702 | 46.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 766 | 46.53 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 767 | 46.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 805 | 46.55 | humidity | 80.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 811 | 46.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 816 | 46.55 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 818 | 46.55 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 828 | 46.56 | humidity | 80.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 838 | 46.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 849 | 46.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 858 | 46.57 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 864 | 46.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 902 | 46.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 926 | 46.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 972 | 46.61 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 11 |