Os09g0255400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS).
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Os09g0255400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.33 | 0.71 | 6.78 | 0.477 | 1.49 | -1.45 | 1 | -1.07 | 0.307 | 21.6 | 58.98 | 1345 | -- | -- |
| 228.69 | 0.704 | 6.77 | 0.535 | 1.48 | -1.55 | 0.965 | -- | 0.322 | 21.5 | 56.89 | 1336 | -- | -- |
| 231.68 | 0.709 | 6.77 | 0.443 | 1.49 | -1.45 | -- | -0.838 | 0.323 | 21.6 | 58 | 1344 | -- | -- |
| 232.08 | 0.71 | 6.76 | 0.493 | 1.49 | -1.54 | -- | -- | 0.32 | 21.6 | 56.94 | 1337 | -- | -- |
| 357.81 | 0.881 | 6.74 | 0.43 | -- | -1.32 | -- | -0.973 | 0.314 | -- | 59 | 1449 | -- | -- |
| 306.19 | 0.82 | 6.69 | 0.214 | 1.43 | -- | 0.842 | -- | 0.63 | 21.2 | -- | -- | -- | -- |
| 308.69 | 0.823 | 6.69 | 0.185 | 1.43 | -- | -- | -- | 0.629 | 21.2 | -- | -- | -- | -- |
| 358.94 | 0.882 | 6.72 | 0.476 | -- | -1.4 | -- | -- | 0.328 | -- | 56 | 1441 | -- | -- |
| 238.28 | 0.719 | 6.77 | -- | 1.49 | -1.46 | -- | -- | 0.282 | 21.6 | 56.36 | 1337 | -- | -- |
| 426.28 | 0.965 | 6.65 | 0.189 | -- | -- | -- | -- | 0.622 | -- | -- | -- | -- | -- |
| 309.59 | 0.823 | 6.69 | -- | 1.43 | -- | -- | -- | 0.609 | 21.2 | -- | -- | -- | -- |
| 364.72 | 0.889 | 6.73 | -- | -- | -1.33 | -- | -- | 0.279 | -- | 57.04 | 1438 | -- | -- |
| 427.22 | 0.965 | 6.65 | -- | -- | -- | -- | -- | 0.601 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.31 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 2 | 228.60 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 3 | 228.67 | humidity | 60 | 1440 | < th | dose independent | sin | 17 | NA |
| 20 | 228.93 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 24 | 229.20 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 29 | 229.40 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 31 | 229.42 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 33 | 229.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 34 | 229.53 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 36 | 229.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 45 | 229.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 66 | 229.73 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 228 | 231.12 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 258 | 231.31 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 264 | 231.42 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 386 | 231.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 390 | 231.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 391 | 231.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 395 | 231.88 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 405 | 231.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 412 | 231.99 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 439 | 232.03 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 561 | 232.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 585 | 233.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 587 | 233.06 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 589 | 233.07 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 598 | 233.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 602 | 233.17 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 620 | 233.30 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 639 | 233.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 658 | 233.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 673 | 233.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 755 | 234.06 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 774 | 234.09 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 799 | 234.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |