Os09g0252700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-) (Ubiquitin-protein ligase 1).
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Os09g0252700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-) (Ubiquitin-protein ligase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.67 | 0.671 | 3.13 | 1.19 | 0.0992 | 2.05 | 0.0263 | 3.17 | 0.305 | 11.7 | 19.7 | 5185 | -- | -- |
| 209.45 | 0.674 | 3 | 1.28 | 0.113 | 1.01 | -0.0421 | -- | 0.444 | 12.5 | 22.5 | 4142 | -- | -- |
| 203.67 | 0.665 | 3.13 | 1.19 | 0.0983 | 2.05 | -- | 3.16 | 0.304 | 12 | 19.72 | 5181 | -- | -- |
| 208.69 | 0.673 | 2.99 | 1.22 | 0.104 | 1 | -- | -- | 0.44 | 12.1 | 22.4 | 3682 | -- | -- |
| 204.29 | 0.666 | 3.13 | 1.19 | -- | 2.07 | -- | 3.2 | 0.306 | -- | 19.73 | 5181 | -- | -- |
| 241.3 | 0.728 | 3.09 | 0.715 | 0.158 | -- | 0.131 | -- | 0.0381 | 11.5 | -- | -- | -- | -- |
| 241.34 | 0.728 | 3.09 | 0.721 | 0.158 | -- | -- | -- | 0.0392 | 12.1 | -- | -- | -- | -- |
| 209.1 | 0.673 | 3 | 1.22 | -- | 1 | -- | -- | 0.433 | -- | 22.5 | 3682 | -- | -- |
| 236.81 | 0.717 | 3.05 | -- | 0.0686 | 0.819 | -- | -- | 0.242 | 11.2 | 22.88 | 1796 | -- | -- |
| 242.92 | 0.728 | 3.09 | 0.716 | -- | -- | -- | -- | 0.0369 | -- | -- | -- | -- | -- |
| 255.04 | 0.747 | 3.1 | -- | 0.149 | -- | -- | -- | -0.0411 | 11.8 | -- | -- | -- | -- |
| 235.75 | 0.715 | 3.06 | -- | -- | 0.695 | -- | -- | 0.197 | -- | 22.9 | 2259 | -- | -- |
| 256.44 | 0.747 | 3.11 | -- | -- | -- | -- | -- | -0.0425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 2 | 200.40 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 5 | 200.69 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 25 | 201.34 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 27 | 201.35 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 4 |
| 37 | 201.40 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 44 | 201.46 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 66 | 201.59 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 70 | 201.60 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 98 | 201.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 155 | 202.17 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 156 | 202.18 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 217 | 202.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 228 | 202.55 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 237 | 202.58 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 243 | 202.63 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 245 | 202.64 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 260 | 202.70 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 273 | 202.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 275 | 202.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 295 | 202.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 398 | 203.39 | temperature | 20.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 435 | 203.55 | temperature | 20.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 561 | 204.11 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 765 | 205.04 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 991 | 205.75 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 19 |