Os09g0249700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2A A subunit (Phosphatase 2A regulatory A subunit).
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Os09g0249700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2A A subunit (Phosphatase 2A regulatory A subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.3 | 0.165 | 13.1 | 1.01 | 0.271 | 0.394 | -0.0519 | -0.412 | 0.544 | 22.7 | 92 | 526 | -- | -- |
| 12.53 | 0.165 | 13.1 | 0.996 | 0.277 | 0.402 | 0.0645 | -- | 0.54 | 22.6 | 91.99 | 528 | -- | -- |
| 12.31 | 0.163 | 13.1 | 1.01 | 0.271 | 0.395 | -- | -0.378 | 0.544 | 22.7 | 92 | 524 | -- | -- |
| 12.54 | 0.165 | 13.1 | 0.987 | 0.273 | 0.396 | -- | -- | 0.539 | 22.6 | 92 | 528 | -- | -- |
| 15.88 | 0.187 | 13.1 | 0.988 | -- | 0.206 | -- | -0.0943 | 0.519 | -- | 89.37 | 1678 | -- | -- |
| 14.56 | 0.179 | 13.2 | 1.01 | 0.217 | -- | 0.0192 | -- | 0.479 | 0.157 | -- | -- | -- | -- |
| 14.56 | 0.179 | 13.2 | 1.01 | 0.217 | -- | -- | -- | 0.479 | 0.159 | -- | -- | -- | -- |
| 15.26 | 0.183 | 13.1 | 1 | -- | 0.189 | -- | -- | 0.502 | -- | 74.88 | 1621 | -- | -- |
| 36.52 | 0.281 | 13.1 | -- | 0.271 | 0.573 | -- | -- | 0.51 | 22.6 | 86.8 | 1963 | -- | -- |
| 17.51 | 0.196 | 13.1 | 1.02 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 41.42 | 0.301 | 13.2 | -- | 0.231 | -- | -- | -- | 0.367 | 0.399 | -- | -- | -- | -- |
| 39.65 | 0.293 | 13.2 | -- | -- | 0.514 | -- | -- | 0.472 | -- | 87 | 1709 | -- | -- |
| 44.77 | 0.312 | 13.2 | -- | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.32 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 5 | 12.44 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 7 | 12.45 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 63 | 12.57 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 69 | 12.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 82 | 12.58 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 120 | 12.67 | humidity | 90 | 720 | > th | dose dependent | sin | 9 | NA |
| 189 | 12.84 | humidity | 90 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 208 | 12.89 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 214 | 12.90 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 241 | 12.94 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 256 | 12.96 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 272 | 12.98 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 287 | 13.01 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 295 | 13.02 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 307 | 13.04 | humidity | 90 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 317 | 13.05 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 319 | 13.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 329 | 13.06 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 330 | 13.06 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 340 | 13.06 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 347 | 13.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 358 | 13.07 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 371 | 13.08 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 21 |
| 381 | 13.09 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 383 | 13.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 395 | 13.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 409 | 13.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 427 | 13.12 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 440 | 13.14 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 16 |
| 452 | 13.15 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 458 | 13.15 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 3 |
| 496 | 13.17 | wind | 7 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 523 | 13.18 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 634 | 13.21 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 647 | 13.22 | wind | 7 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 668 | 13.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 680 | 13.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 732 | 13.25 | humidity | 90 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 733 | 13.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 766 | 13.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 767 | 13.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 775 | 13.26 | humidity | 70 | 1440 | > th | dose dependent | sin | 14 | NA |
| 778 | 13.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 779 | 13.26 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 804 | 13.27 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 805 | 13.27 | humidity | 90 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 816 | 13.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 839 | 13.28 | humidity | 90 | 1440 | > th | dose independent | sin | 14 | NA |
| 840 | 13.28 | humidity | 90 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 874 | 13.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 882 | 13.29 | humidity | 90 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 941 | 13.31 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 964 | 13.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 974 | 13.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 992 | 13.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |