Os09g0248000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF516 family protein.
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Os09g0248000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF516 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.27 | 0.236 | 11 | -0.712 | 0.286 | 0.538 | -0.309 | 0.446 | -0.175 | 19.1 | 26.96 | 3024 | -- | -- |
| 25.33 | 0.234 | 10.9 | -0.628 | 0.288 | 0.485 | -0.294 | -- | -0.181 | 19.2 | 48.43 | 3017 | -- | -- |
| 25.5 | 0.235 | 11 | -0.705 | 0.281 | 0.534 | -- | 0.424 | -0.178 | 19.4 | 27.05 | 2994 | -- | -- |
| 25.54 | 0.235 | 10.9 | -0.616 | 0.291 | 0.497 | -- | -- | -0.18 | 19.4 | 32.8 | 2990 | -- | -- |
| 29.7 | 0.254 | 10.9 | -0.72 | -- | 0.563 | -- | 0.48 | -0.169 | -- | 25.86 | 2890 | -- | -- |
| 29.89 | 0.256 | 11 | -0.83 | 0.296 | -- | -0.34 | -- | -0.279 | 18.9 | -- | -- | -- | -- |
| 30.16 | 0.257 | 11 | -0.825 | 0.295 | -- | -- | -- | -0.28 | 19.1 | -- | -- | -- | -- |
| 29.87 | 0.255 | 10.9 | -0.623 | -- | 0.487 | -- | -- | -0.174 | -- | 31.3 | 2891 | -- | -- |
| 26.16 | 0.238 | 10.9 | -- | 0.295 | 0.766 | -- | -- | 0.00991 | 19.3 | 23.34 | 47520 | -- | -- |
| 34.74 | 0.275 | 11 | -0.831 | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
| 48.1 | 0.324 | 10.9 | -- | 0.304 | -- | -- | -- | -0.188 | 18.9 | -- | -- | -- | -- |
| 30.77 | 0.258 | 10.9 | -- | -- | 0.768 | -- | -- | 0.00699 | -- | 23.4 | 47520 | -- | -- |
| 52.93 | 0.34 | 10.9 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.73 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 2 | 24.80 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 4 | 24.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 7 | 24.88 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 11 | 24.93 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 14 | 24.96 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 24.98 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 29 | 24.99 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 33 | 25.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 35 | 25.02 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 41 | 25.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 17 |
| 42 | 25.04 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 48 | 25.05 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 52 | 25.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 61 | 25.07 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 64 | 25.07 | radiation | 30 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 71 | 25.08 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 72 | 25.08 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 97 | 25.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 18 |
| 109 | 25.09 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 110 | 25.10 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 125 | 25.10 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 141 | 25.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 22 |
| 154 | 25.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 13 |
| 168 | 25.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 170 | 25.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 184 | 25.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 197 | 25.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 229 | 25.17 | radiation | 40 | 4320 | < th | dose dependent | rect. | 20 | 10 |
| 247 | 25.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 280 | 25.20 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 287 | 25.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 288 | 25.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 295 | 25.21 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 311 | 25.22 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 316 | 25.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 321 | 25.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 367 | 25.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 430 | 25.28 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 432 | 25.28 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 441 | 25.28 | radiation | 40 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 451 | 25.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 452 | 25.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 476 | 25.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 515 | 25.31 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 525 | 25.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 556 | 25.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 561 | 25.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 592 | 25.33 | wind | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 610 | 25.34 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 613 | 25.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 620 | 25.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 633 | 25.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 636 | 25.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 642 | 25.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 646 | 25.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 648 | 25.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 675 | 25.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 679 | 25.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 694 | 25.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 703 | 25.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 705 | 25.36 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 719 | 25.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 721 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 726 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 736 | 25.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 745 | 25.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 779 | 25.37 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 805 | 25.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 850 | 25.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 907 | 25.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 12 |