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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0247700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 536 (--) R2 : 0.413
β1 : -4750 (--) R2dD : 4570000 R2D : -5510000
β2 : -- (--) R2dC : -- R2C : --
β3 : 121000 (--) R2dE : 2.14e+08 R2E : -2.15e+08
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -1090000 (--) R2dD*E : 2.18e+08 R2D*E : -2.17e+08
γ1 : 0.311 (--) R2dN8 : 0.0747 R2N8 : -939000
σ : 0.415
deviance : 79.29
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 5.386
memory length : 2
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 11.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.42 0.405 536 -4750 0.257 121000 -0.175 -1090000 0.295 2.83 5.386 2 18.6 11.2
118.49 0.511 11.9 0.458 0.231 -0.317 -0.371 -- 0.325 1.57 5.595 3 17.4 10.4
74.63 0.402 536 -4750 0.283 121000 -- -1090000 0.304 2.56 5.386 2 18.6 11.2
110.25 0.489 11.9 0.438 0.162 -0.568 -- -- 0.276 2.04 5.97 9 19.3 10.4
79.29 0.415 536 -4750 -- 121000 -- -1090000 0.311 -- 5.386 2 18.6 11.2
118.63 0.511 11.9 0.462 0.233 -- -0.379 -- 0.327 1.67 -- -- -- --
119.19 0.511 11.9 0.474 0.233 -- -- -- 0.329 1.46 -- -- -- --
111.04 0.491 11.9 0.454 -- -0.852 -- -- 0.185 -- 6.101 8 20.5 9.36
106.47 0.481 11.9 -- 0.498 -1.56 -- -- 0.368 2.58 2.631 11 21.1 8.78
122.51 0.517 11.9 0.484 -- -- -- -- 0.334 -- -- -- -- --
125.12 0.523 11.9 -- 0.241 -- -- -- 0.276 1.53 -- -- -- --
102.68 0.472 11.9 -- -- -1.9 -- -- 0.392 -- 6.26 13 21.1 8.67
128.68 0.529 11.9 -- -- -- -- -- 0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.25 wind 7 1440 < th dose independent rect. 5 1
3 109.25 temperature 10 1440 > th dose independent rect. 5 1
6 109.25 temperature 30 1440 < th dose independent rect. 5 1
10 109.25 humidity 50 1440 > th dose independent rect. 5 1
19 109.25 atmosphere 995 1440 > th dose independent rect. 5 1
20 109.25 atmosphere 1015 1440 < th dose independent rect. 5 1
21 109.25 radiation 20 1440 < th dose independent rect. 5 1
30 109.25 temperature 10 1440 > th dose independent rect. 6 23
33 109.97 radiation 1 10 > th dose dependent rect. 18 12
34 110.05 radiation 1 10 > th dose dependent rect. 5 1
46 110.98 wind 1 30 < th dose independent rect. 5 1
58 111.11 wind 1 270 < th dose dependent rect. 4 1
66 111.65 wind 7 14400 < th dose independent rect. 11 1
67 111.66 wind 7 14400 > th dose independent rect. 10 2
70 111.70 temperature 20 10 > th dose dependent rect. 5 1
74 111.81 wind 7 14400 > th dose dependent rect. 10 2
84 111.95 wind 7 14400 > th dose dependent rect. 5 8
85 111.98 wind 7 14400 > th dose dependent rect. 7 6
90 112.08 wind 7 14400 > th dose independent rect. 5 8
93 112.11 wind 7 14400 < th dose independent rect. 5 8
97 112.12 wind 1 90 < th dose independent rect. 4 9
106 112.16 humidity 50 1440 < th dose independent rect. 16 1
108 112.17 humidity 50 1440 < th dose dependent rect. 16 1
132 112.29 wind 7 14400 > th dose dependent rect. 24 14
140 112.36 wind 1 90 < th dose dependent rect. 4 9
150 112.41 wind 1 90 < th dose dependent rect. 4 11
162 112.44 wind 9 14400 < th dose independent rect. 22 16
201 112.64 wind 1 90 < th dose dependent rect. 4 13
208 112.66 temperature 30 720 > th dose dependent rect. 18 1
223 112.67 wind 9 14400 > th dose independent rect. 22 16
224 112.68 atmosphere 1005 30 > th dose independent rect. 5 1
226 112.68 wind 1 90 < th dose independent rect. 4 13
235 112.70 wind 7 14400 > th dose independent rect. 24 14
261 112.83 wind 9 14400 < th dose independent sin 6 NA
271 112.88 wind 7 14400 > th dose dependent sin 5 NA
275 112.90 humidity 50 1440 > th dose independent rect. 16 1
291 112.95 temperature 20 30 > th dose independent rect. 5 1
296 112.96 wind 9 14400 > th dose independent sin 6 NA
310 113.01 radiation 1 30 > th dose independent rect. 18 12
329 113.05 radiation 1 30 > th dose independent rect. 5 1
405 113.25 humidity 50 1440 > th dose independent rect. 17 12
415 113.27 wind 1 14400 > th dose dependent rect. 11 2
425 113.28 wind 9 14400 > th dose independent rect. 18 20
426 113.29 humidity 50 1440 > th dose independent rect. 16 4
439 113.30 humidity 50 1440 > th dose independent rect. 16 9
466 113.32 humidity 50 1440 > th dose independent rect. 16 15
474 113.33 wind 9 14400 < th dose dependent rect. 11 2
499 113.35 wind 1 90 > th dose independent sin 5 NA
578 113.39 wind 9 14400 > th dose independent rect. 18 22
579 113.39 wind 9 14400 < th dose independent rect. 18 22
660 113.48 wind 9 14400 > th dose dependent rect. 18 22
661 113.49 humidity 70 720 < th dose independent rect. 19 1
839 113.63 wind 9 14400 > th dose dependent rect. 22 22
864 113.65 temperature 30 720 > th dose independent rect. 18 1
893 113.67 humidity 50 1440 < th dose independent sin 11 NA
897 113.67 wind 9 14400 < th dose independent rect. 5 15
903 113.68 wind 9 14400 < th dose independent rect. 22 22
977 113.72 wind 9 14400 > th dose dependent rect. 9 11
981 113.73 wind 9 14400 < th dose independent rect. 9 11
997 113.74 wind 9 14400 > th dose independent rect. 22 22