Os09g0244000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os09g0244000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.43 | 0.403 | 2.9 | -0.0795 | 0.055 | 3.49 | -0.149 | 13.8 | 0.0389 | 21.9 | 997.7 | 77 | 8.73 | 2.4 |
| 73.7 | 0.403 | 2.9 | -0.11 | 0.0489 | 5.87 | -0.177 | -- | 0.0377 | 21.4 | 997.4 | 64 | 8.59 | 1.73 |
| 73.48 | 0.399 | 2.9 | -0.071 | 0.0583 | 3.3 | -- | 15 | 0.039 | 23.3 | 997.6 | 85 | 8.63 | 2.58 |
| 73.5 | 0.399 | 2.9 | -0.111 | 0.0568 | 5.83 | -- | -- | 0.0328 | 23.8 | 997.7 | 157 | 8.53 | 2.45 |
| 73.69 | 0.4 | 2.89 | -0.0684 | -- | 3.12 | -- | 15.9 | 0.0393 | -- | 997.5 | 100 | 8.56 | 2.82 |
| 107.74 | 0.487 | 2.9 | -0.0804 | 0.00636 | -- | 0.375 | -- | 0.0253 | 7.87 | -- | -- | -- | -- |
| 108.13 | 0.487 | 2.9 | -0.0712 | 0.0219 | -- | -- | -- | 0.0244 | 3.3 | -- | -- | -- | -- |
| 73.69 | 0.4 | 2.9 | -0.11 | -- | 5.88 | -- | -- | 0.0391 | -- | 997.6 | 127 | 8.57 | 2.62 |
| 73.79 | 0.4 | 2.9 | -- | 0.0582 | 5.87 | -- | -- | 0.0496 | 23.4 | 997.6 | 132 | 8.52 | 2.55 |
| 108.15 | 0.486 | 2.9 | -0.0703 | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
| 108.26 | 0.487 | 2.9 | -- | 0.0205 | -- | -- | -- | 0.0324 | 3.3 | -- | -- | -- | -- |
| 73.99 | 0.401 | 2.9 | -- | -- | 5.84 | -- | -- | 0.0509 | -- | 997.5 | 92 | 8.46 | 2.93 |
| 108.28 | 0.486 | 2.9 | -- | -- | -- | -- | -- | 0.0328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.48 | atmosphere | 1e+03 | 90 | < th | dose dependent | rect. | 9 | 2 |
| 50 | 93.69 | atmosphere | 1e+03 | 90 | < th | dose independent | rect. | 8 | 3 |
| 52 | 93.96 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 2 | 3 |
| 55 | 93.98 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 65 | 93.99 | precipitation | 1e-01 | 30 | > th | dose dependent | rect. | 1 | 5 |
| 92 | 94.04 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 9 | 1 |
| 127 | 94.13 | wind | 3e+00 | 10 | > th | dose independent | rect. | 4 | 1 |
| 133 | 94.13 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 310 | 94.29 | precipitation | 1e-01 | 10 | > th | dose dependent | sin | 4 | NA |
| 428 | 94.47 | precipitation | 1e-01 | 10 | > th | dose independent | sin | 4 | NA |
| 429 | 94.47 | precipitation | 1e-01 | 10 | < th | dose independent | sin | 4 | NA |
| 434 | 94.47 | precipitation | 1e-01 | 10 | < th | dose dependent | sin | 4 | NA |
| 737 | 95.90 | precipitation | 1e-01 | 10 | < th | dose independent | rect. | 21 | 23 |
| 738 | 95.90 | precipitation | 1e-01 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 798 | 96.11 | atmosphere | 1e+03 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 841 | 96.25 | precipitation | 1e-01 | 10 | > th | dose dependent | no | NA | NA |