BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0244000 Os09g0244000|Os09g0244000
         (1149 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263         229   6e-60
ATMG00810.1  | chrM:227709-228431 REVERSE LENGTH=241              185   1e-46
ATMG00240.1  | chrM:68918-69253 REVERSE LENGTH=112                 85   2e-16
AT1G40087.1  | chr1:14999762-15001868 REVERSE LENGTH=391           69   1e-11
AT3G30200.1  | chr3:11827752-11834262 REVERSE LENGTH=511           56   1e-07

>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score =  229 bits (584), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 8/347 (2%)

Query: 770  FPHVSVVIPEPSTYQQSSTIPEWQLAMSEELVALDRIAAGFSPSEHDPALFIHLSPRGRT 829
             P  +V   + S Y       +W L  S  L+       GF  S  D   F+ ++     
Sbjct: 224  LPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGF-----GFVQSHSDHTYFLKITATLFL 278

Query: 830  LLLLYVDDMLITGDDVDHISHVKRHLNEQFQMTDLGPLSYFLGIEVLHSAKGYYLSQSKY 889
             +L+YVDD++I  ++   +  +K  L   F++ DLGPL YFLG+E+  SA G  + Q KY
Sbjct: 279  CVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKY 338

Query: 890  IQDLIVRSGITDNRTVATPMDLHLQLRGTDGTPLEDPSHYHHIVGSLVYLTVTRLDIAHA 949
              DL+  +G+   +  + PMD  +      G    D   Y  ++G L+YL +TRLDI+ A
Sbjct: 339  ALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFA 398

Query: 950  VHILSQFVSAPTSVHFGHLLRVLRYLRGISSQCLFYARDSPLQLHAYSDSTWASDPTDRR 1009
            V+ LSQF  AP   H   ++++L Y++G   Q LFY+  + +QL  +SD+++ S    RR
Sbjct: 399  VNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRR 458

Query: 1010 SVTGYCILLGSSPLAWKSKKQAVVSRSSTEAKLQALATTTSEIVWLRWLLVDFGIVCGAP 1069
            S  GYC+ LG+S ++WKSKKQ VVS+SS EA+ +AL+  T E++WL     +  +    P
Sbjct: 459  STNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKP 518

Query: 1070 TPLLC--TGAIQIANDPVKHELTKHIGVDASFTRSH-CYQKTIALQY 1113
            T L C  T AI IA + V HE TKHI  D    R    YQ T++  +
Sbjct: 519  TLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSF 565



>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
          Length = 240

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 1/224 (0%)

Query: 831  LLLYVDDMLITGDDVDHISHVKRHLNEQFQMTDLGPLSYFLGIEVLHSAKGYYLSQSKYI 890
            LLLYVDD+L+TG     ++ +   L+  F M DLGP+ YFLGI++     G +LSQ+KY 
Sbjct: 3    LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 891  QDLIVRSGITDNRTVATPMDLHLQLRGTDGTPLEDPSHYHHIVGSLVYLTVTRLDIAHAV 950
            + ++  +G+ D + ++TP+ L L           DPS +  IVG+L YLT+TR DI++AV
Sbjct: 63   EQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121

Query: 951  HILSQFVSAPTSVHFGHLLRVLRYLRGISSQCLFYARDSPLQLHAYSDSTWASDPTDRRS 1010
            +I+ Q +  PT   F  L RVLRY++G     L+  ++S L + A+ DS WA   + RRS
Sbjct: 122  NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181

Query: 1011 VTGYCILLGSSPLAWKSKKQAVVSRSSTEAKLQALATTTSEIVW 1054
             TG+C  LG + ++W +K+Q  VSRSSTE + +ALA T +E+ W
Sbjct: 182  TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225



>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
          Length = 111

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%)

Query: 937  VYLTVTRLDIAHAVHILSQFVSAPTSVHFGHLLRVLRYLRGISSQCLFYARDSPLQLHAY 996
            +YLT+TR D+  AV+ LSQF SA  +     + +VL Y++G   Q LFY+  S LQL A+
Sbjct: 1    MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 997  SDSTWASDPTDRRSVTGYCILL 1018
            +DS WAS P  RRSVTG+C L+
Sbjct: 61   ADSDWASCPDTRRSVTGFCSLV 82



>AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391
          Length = 390

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 32/298 (10%)

Query: 83  LKQGKVIVETDEH-GIPNDRSGSVLGSYLGKLAQNSTFAPLDIPKWDHDLFVGPKESIVA 141
           ++  +VIV  DE+   P   SG +LGS+L +L+ +    P++   W     V P    + 
Sbjct: 60  MQNHRVIVHFDEYTNQPIGDSGGLLGSWLSQLSNDIMLLPINYTDWR---LVSPH---IK 113

Query: 142 DVELFMVKMKFVYPSETKQLTRDWILMKADKGWRSYKSRLKGRYFNPDVRTLNDILKYVP 201
           D    +++ KF +  +   + +D+++       +  K R    Y       LN+ L+  P
Sbjct: 114 DRAWAVIQSKFRF--DDPMMRKDYVMGALGSKCKDVKLRFWREY---KRNNLNETLQNRP 168

Query: 202 KGVNGYQWRGLVKIWCQDKHKKLCEKNSESAKQQRNPHTTGRKSHARLCKEMEAKVKGKV 261
           + V   QW  LV +   DK +K+ E+N+++ K    PH  GRKS +R   E++ K     
Sbjct: 169 EKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNHIMPHLCGRKSFSRKRDEIKIKTGKTP 228

Query: 262 HDIDVWDEAHKKKD-----ERIKAVVESAYHELAKKKSTSCSGLSSKD--YDEVFR---- 310
              + + E+ KK D     +  K   E+    L      + +G +S D  Y +VF     
Sbjct: 229 CRAEFFIESRKKHDGSFVSDEAKLRAEALTTLLNLNPQVTYNGTASLDDEYSQVFGPERP 288

Query: 311 ---RVVGKETKLRGYYDHKNWSQIRVSQGLDVVGQSEEYAMLKLQMNAMENKIEAMSV 365
              R VG+         H N ++ +       +  SE  A LK Q+  + +++ AMS 
Sbjct: 289 GRVRCVGRGPTPSRLVRHSNATRRQ------DIENSELVAQLKTQVKTLGDQVNAMST 340



>AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511
          Length = 510

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 35/272 (12%)

Query: 110 LGKLAQNSTFAPLDIPKWDHDLFVGPKESIVADVELFMVKMKFVYPSETKQLTRDWILMK 169
           +G+L+ +    P++   W     V P    + D    +++ KF +         D  +M+
Sbjct: 208 IGQLSNDVMLLPINYTDWR---LVSPH---IKDRAWAVIQSKFRF---------DDPMMR 252

Query: 170 ADKGWRSYKSRLKG---RYFNPDVRT-LNDILKYVPKGVNGYQWRGLVKIWCQDKHKKLC 225
            D    +  SR K    R++    R  LN+ L+  P+ V   QW  LV +   DK +K+ 
Sbjct: 253 KDYVMGALGSRCKDVKLRFWREHKRNNLNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQ 312

Query: 226 EKNSESAKQQRNPHTTGRKSHARLCKEMEAKVKGKVHDIDVWDEAHKKKD-------ERI 278
           E+N+++ K    PH  GRKS +R   E++ K       ++ + E+ KK D        ++
Sbjct: 313 ERNTKNQKNHIMPHLCGRKSFSRKRDEIKIKTGKTPCRVEFFIESRKKHDGSFVSDEAKL 372

Query: 279 KAVVESAYHELAKKKSTSCSGLSSKDYDEVFRRVVGKETKLRGYYDHKNWSQIRVSQGLD 338
           +A+  +    L  + + + +     +Y +VF    G E   R +   +  +  R+ +  +
Sbjct: 373 RAIALTTLLNLNPQVTYNGTASLDDEYSQVF----GPERPGRVHCVGRGPTPSRLVRHSN 428

Query: 339 V-----VGQSEEYAMLKLQMNAMENKIEAMSV 365
                 +  SE  A LK Q+  + +++ AMS 
Sbjct: 429 ATRRKDIENSELVAQLKTQVKTLGDQVNAMST 460



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 24,972,691
Number of extensions: 1082208
Number of successful extensions: 2984
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2981
Number of HSP's successfully gapped: 5
Length of query: 1149
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 1040
Effective length of database: 8,118,225
Effective search space: 8442954000
Effective search space used: 8442954000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)