Os09g0241700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os09g0241700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.56 | 0.337 | 10.8 | -0.394 | 0.248 | 0.747 | 0.506 | -0.239 | 0.64 | 1.9 | 25.16 | 76 | -- | -- |
| 51.64 | 0.335 | 10.8 | -0.397 | 0.253 | 0.742 | 0.304 | -- | 0.637 | 1.94 | 25.45 | 76 | -- | -- |
| 51.89 | 0.335 | 10.8 | -0.399 | 0.245 | 0.757 | -- | 0.146 | 0.637 | 2.04 | 25.61 | 77 | -- | -- |
| 51.98 | 0.336 | 10.8 | -0.403 | 0.242 | 0.756 | -- | -- | 0.637 | 2.04 | 25.26 | 76 | -- | -- |
| 52.87 | 0.339 | 10.8 | -0.39 | -- | 0.905 | -- | 0.126 | 0.652 | -- | 22.28 | 80 | -- | -- |
| 61.15 | 0.367 | 10.8 | -0.427 | 0.924 | -- | 0.357 | -- | 0.59 | 0.974 | -- | -- | -- | -- |
| 61.69 | 0.368 | 10.8 | -0.44 | 0.924 | -- | -- | -- | 0.589 | 0.972 | -- | -- | -- | -- |
| 52.95 | 0.339 | 10.8 | -0.393 | -- | 0.907 | -- | -- | 0.652 | -- | 22.28 | 80 | -- | -- |
| 56.24 | 0.349 | 10.8 | -- | 0.2 | 0.792 | -- | -- | 0.684 | 2.2 | 25.03 | 78 | -- | -- |
| 114.78 | 0.501 | 10.8 | -0.405 | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
| 66.79 | 0.382 | 10.8 | -- | 0.916 | -- | -- | -- | 0.638 | 0.952 | -- | -- | -- | -- |
| 57 | 0.352 | 10.8 | -- | -- | 0.917 | -- | -- | 0.696 | -- | 22.96 | 80 | -- | -- |
| 119.12 | 0.509 | 10.8 | -- | -- | -- | -- | -- | 0.651 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.69 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 3 | 49.05 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 4 | 49.08 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 5 | 49.08 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 31 | 49.77 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 32 | 49.83 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 34 | 49.92 | radiation | 20.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 47 | 50.21 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 49 | 50.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 51 | 50.33 | humidity | 70.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 57 | 50.42 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 72 | 50.59 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 95 | 50.77 | humidity | 50.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 118 | 50.91 | humidity | 80.0 | 10 | > th | dose independent | sin | 0 | NA |
| 163 | 51.06 | humidity | 80.0 | 10 | < th | dose independent | sin | 0 | NA |
| 225 | 51.26 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 228 | 51.27 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 236 | 51.29 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 255 | 51.35 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 266 | 51.38 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 271 | 51.41 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 22 |
| 293 | 51.48 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 312 | 51.53 | humidity | 90.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 393 | 51.73 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 413 | 51.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 437 | 51.81 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 445 | 51.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 464 | 51.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 476 | 51.90 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 507 | 51.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 520 | 51.99 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 521 | 52.00 | radiation | 40.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 526 | 52.01 | radiation | 1.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 528 | 52.01 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 548 | 52.04 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 594 | 52.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 610 | 52.12 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 611 | 52.12 | humidity | 80.0 | 10 | > th | dose independent | rect. | 7 | 13 |
| 614 | 52.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 624 | 52.13 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 678 | 52.21 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 682 | 52.22 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 7 |
| 721 | 52.26 | radiation | 1.0 | 30 | > th | dose dependent | no | NA | NA |
| 805 | 52.28 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 899 | 52.38 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 931 | 52.41 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 7 |
| 962 | 52.44 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 17 | 18 |
| 988 | 52.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 992 | 52.46 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 993 | 52.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |