BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0241700 Os09g0241700|AK065944
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 82 5e-16
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 82 5e-16
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 65 4e-11
AT1G66235.1 | chr1:24683006-24683874 REVERSE LENGTH=266 50 2e-06
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 9/165 (5%)
Query: 52 KRLSWMKDEDLRLISAWLNNSNDPIESNFKKNDKYWGDVAAAYNSTTPKN--RARLVKQV 109
+R W EDL L+SAWLN S D + N +K +W +AA Y ++ N R +
Sbjct: 46 ERRKWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAAYYGASPKLNGVEKRETGHI 105
Query: 110 KDRFGKIRKKVGNFCCSWKEVNSLYASGESNEDLMNKAQKIYENDFKDGPFLFMHCWNEL 169
K R+ KI + VG F S++ +SG++++D++ A +IY ++ G F H W L
Sbjct: 106 KQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH--GKFTLEHAWRVL 163
Query: 170 KKQPKWHAY--LEQLDKSNKRKADYNDVI---PLDDEEDIPRPIG 209
+ + KW + + S +RK+D + EE + RPIG
Sbjct: 164 RFEQKWLSAPSTKATVMSKRRKSDKASTSQPQTHEAEEAMSRPIG 208
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 34 GSPSQPINVVNGHVARTDKRLSWMKDEDLRLISAWLNNSNDPIESNFKKNDKYWGDVAAA 93
G S N+V R R W + ED LISAWLN S DPI N K +W + A
Sbjct: 251 GEKSDDPNLVQNTTDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAY 310
Query: 94 YNSTT-----PKNRARLVKQVKDRFGKIRKKVGNFCCSWKEVNSLYASGESNEDLMNKAQ 148
+N++ PK KQ R+ K+ KV F + + + +SG+S +D+ A
Sbjct: 311 FNNSASLANLPKREPSHCKQ---RWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAY 367
Query: 149 KIYENDFKDGPFLFMHCWNELKKQPKWHAY----------------LEQLDKSNKRKADY 192
++Y N++K F H W EL+ KW + L D+ ++
Sbjct: 368 QVYTNNYKSN-FTLEHAWRELRHSKKWCSLYPFENSKGGGSSKRTKLNNGDRVYSSSSNP 426
Query: 193 NDV-IPLDDEEDI-PRPIGAKASKAQRSCKEKSKVQVCTTE 231
V I LD+EE + P+G K+SK KEK + T E
Sbjct: 427 ESVPIALDEEEQVMDLPLGVKSSKQ----KEKKVATIITIE 463
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 27/266 (10%)
Query: 34 GSPSQPINVVNGHVARTDKRLSWMKDEDLRLISAWLNNSND--PIESNFKKNDKYWGDVA 91
G S N+V R +R W +D+ LISAWLN S D + + ++ +W +
Sbjct: 251 GGTSDGPNLVQDTTDRKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIG 310
Query: 92 A-AYNSTTPKNRA-RLVKQVKDRFGKIRKKVGNFCCSWKEVNSLYASGESNEDLMNKAQK 149
A NS + N R + R+ KI V F + + + ASG+S +D+ A +
Sbjct: 311 AHVSNSASLANLPKREWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQ 370
Query: 150 IYENDFKDGPFLFMHCWNELKKQPKW-HAYLEQLDK----SNKRKADYNDV--------- 195
+Y N++ F H W EL+ KW Y + K S + K + V
Sbjct: 371 LYYNNYMSN-FKLEHAWRELRHNKKWCSTYTSENSKGGGSSKRTKLNGGGVYSSSCNPES 429
Query: 196 --IPLDDEEDI-PRPIGAKASKAQRSCKEKSKVQVCTTELEDDIRKFMDAHAATKEGQNE 252
I LD EE + RP+G K+SK + ++K + E E D R ++ E + +
Sbjct: 430 VPIALDGEEQVMDRPLGVKSSKQK---EKKVATKTMLEEREADSRSRLENLWVLDE-EEQ 485
Query: 253 VLETQIRVSIDNHAAKKLSRQTAMIE 278
V++ + V +K++ +T MIE
Sbjct: 486 VMDLPLGVKSSKQKERKVATKT-MIE 510
>AT1G66235.1 | chr1:24683006-24683874 REVERSE LENGTH=266
Length = 265
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 72 SNDPIESNFKKNDKYWGDVAAAY-NSTTPKNRARLVKQVKDRFGKIRKKVGNFCCSWKEV 130
S DPI ++ +D +W VA ++ N P R K ++ R I K K
Sbjct: 4 SQDPIIGVYQSSDHFWDRVAESFENRKNPTWSKRSKKSLQCRLQTIEKASKKLHACIKLC 63
Query: 131 NSLYASGESNEDLMNKAQKIYEND--FKDGPFLFMHCWNELKKQPKWHAYLEQLDK---- 184
+ +SG S++D+ N+A+++ D FK G + F H WN ++ K+ Q K
Sbjct: 64 ENRRSSGASSDDIFNQAKEMLMQDKHFKSG-WKFDHVWNIIRNFEKFKDGATQAKKVLNL 122
Query: 185 -----------SNKRKADYNDVIPLDDEEDI------PRPIGAKASKAQRSCKEKSKVQV 227
S ++ + LDDE+DI RPI K SK +R K + V
Sbjct: 123 CGLENPTLDSVSQASSGSFSFSLNLDDEDDIIGRSPYQRPIRVKKSKLKR--KNDQILDV 180
Query: 228 CTTELEDDIRKFMDAHAATKEGQNEVLETQ 257
T E+ ++ M+ T + + LE Q
Sbjct: 181 IKT-FEEGNKQLMEQLKKTSAQRQQYLEMQ 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,515,930
Number of extensions: 340175
Number of successful extensions: 1097
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1091
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)