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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0127700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.024) R2 : 6.33e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00857 (0.0504) R2dN8 : 8.17e-05 R2N8 : 6.33e-05
σ : 0.451
deviance : 93.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.54 0.442 3.31 0.171 0.152 0.271 -0.262 1.22 -0.0411 5.66 90.36 5897 -- --
90.66 0.443 3.31 0.0968 0.149 0.31 -0.313 -- -0.0671 5.36 90.99 5858 -- --
88.68 0.439 3.31 0.173 0.152 0.269 -- 1.23 -0.0388 6.2 90.45 5913 -- --
90.75 0.444 3.31 0.0984 0.18 0.35 -- -- -0.0708 5.87 91.97 4580 -- --
89.86 0.442 3.32 0.174 -- 0.271 -- 1.24 -0.0356 -- 89 5838 -- --
91.88 0.449 3.3 0.0712 0.151 -- -0.285 -- -0.00509 5.56 -- -- -- --
92.05 0.449 3.3 0.0707 0.152 -- -- -- -0.00363 6.13 -- -- -- --
92.04 0.447 3.31 0.0862 -- 0.311 -- -- -0.0607 -- 91.02 4331 -- --
90.92 0.444 3.31 -- 0.173 0.326 -- -- -0.0755 5.82 91 4564 -- --
93.24 0.451 3.3 0.0749 -- -- -- -- -0.000252 -- -- -- -- --
92.18 0.449 3.3 -- 0.153 -- -- -- -0.0115 6.11 -- -- -- --
92.18 0.447 3.31 -- -- 0.292 -- -- -0.0703 -- 88.79 5687 -- --
93.39 0.451 3.3 -- -- -- -- -- -0.00857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.37 precipitation 0.1 720 < th dose independent rect. 15 8
2 84.37 precipitation 0.1 720 < th dose dependent rect. 15 8
3 84.47 atmosphere 995.0 720 > th dose independent rect. 23 16
4 84.52 temperature 10.0 720 > th dose independent rect. 3 8
5 84.52 atmosphere 995.0 720 > th dose independent rect. 3 8
6 84.52 temperature 10.0 720 > th dose independent rect. 11 16
7 84.55 temperature 10.0 720 > th dose independent rect. 15 8
8 84.55 temperature 10.0 720 > th dose independent rect. 23 16
9 84.62 wind 7.0 1440 < th dose independent rect. 23 1
10 84.69 humidity 90.0 30 < th dose dependent rect. 22 1
11 84.71 wind 9.0 720 < th dose independent rect. 3 8
12 84.72 temperature 25.0 30 > th dose dependent rect. 22 1
13 84.73 humidity 90.0 30 < th dose independent rect. 22 1
14 84.76 humidity 50.0 720 > th dose independent rect. 3 8
15 84.79 wind 1.0 30 > th dose independent rect. 22 1
17 84.79 temperature 10.0 1440 > th dose independent rect. 23 1
20 84.79 temperature 30.0 1440 < th dose independent rect. 23 1
24 84.79 humidity 50.0 1440 > th dose independent rect. 23 1
34 84.79 atmosphere 995.0 1440 > th dose independent rect. 23 1
35 84.79 radiation 1.0 1440 < th dose independent rect. 23 1
55 84.79 temperature 10.0 1440 > th dose independent rect. 24 23
58 84.79 atmosphere 1005.0 30 > th dose dependent rect. 22 1
59 84.79 radiation 1.0 1440 < th dose dependent rect. 23 1
65 84.81 temperature 10.0 30 > th dose dependent rect. 22 1
67 84.82 temperature 20.0 30 > th dose independent rect. 22 1
68 84.82 atmosphere 1005.0 30 > th dose independent rect. 22 1
70 84.83 wind 1.0 30 > th dose dependent rect. 22 1
72 84.84 wind 5.0 30 < th dose independent rect. 22 1
75 84.84 temperature 10.0 30 > th dose independent rect. 22 1
78 84.84 temperature 30.0 30 < th dose independent rect. 22 1
79 84.84 humidity 50.0 30 > th dose independent rect. 22 1
82 84.84 atmosphere 995.0 30 > th dose independent rect. 22 1
83 84.84 atmosphere 1010.0 30 < th dose independent rect. 22 1
85 84.84 radiation 1.0 30 < th dose independent rect. 22 1
90 84.84 precipitation 0.1 30 < th dose independent rect. 22 1
91 84.84 temperature 10.0 30 > th dose independent rect. 23 23
93 84.84 radiation 1.0 30 < th dose dependent rect. 22 1
98 84.84 precipitation 0.1 30 < th dose dependent rect. 22 1
99 84.86 wind 9.0 30 < th dose dependent rect. 22 1
101 84.88 precipitation 0.1 720 < th dose independent rect. 11 16
102 84.88 precipitation 0.1 720 < th dose dependent rect. 11 16
105 84.89 humidity 50.0 30 > th dose dependent rect. 22 1
108 84.91 atmosphere 1015.0 30 < th dose dependent rect. 22 1
114 85.01 wind 9.0 30 < th dose independent rect. 23 23
115 85.01 temperature 30.0 30 < th dose dependent rect. 22 1
161 85.48 atmosphere 1015.0 720 < th dose independent rect. 3 8
166 85.56 atmosphere 995.0 30 > th dose independent rect. 23 23
167 85.58 radiation 40.0 720 < th dose independent rect. 15 8
177 85.83 atmosphere 995.0 720 > th dose independent rect. 11 16
179 85.94 atmosphere 995.0 720 > th dose independent rect. 15 8
182 85.98 atmosphere 1000.0 30 > th dose independent rect. 3 23
183 85.99 radiation 1.0 43200 < th dose dependent rect. 3 1
186 86.06 atmosphere 1005.0 90 > th dose dependent rect. 2 1
190 86.20 precipitation 0.1 720 < th dose independent rect. 3 8
191 86.20 precipitation 0.1 720 < th dose dependent rect. 3 8
195 86.37 atmosphere 1005.0 10 > th dose dependent rect. 2 2
197 86.39 precipitation 0.1 1440 < th dose independent rect. 23 1
198 86.39 precipitation 0.1 1440 < th dose dependent rect. 23 1
200 86.50 wind 1.0 10 < th dose dependent rect. 2 1
205 86.66 wind 9.0 720 < th dose independent rect. 15 8
208 86.68 precipitation 0.1 720 < th dose independent rect. 23 16
209 86.68 precipitation 0.1 720 < th dose dependent rect. 23 16
212 86.79 wind 1.0 10 > th dose independent rect. 23 23
216 86.84 temperature 20.0 10 > th dose dependent rect. 2 1
218 86.85 wind 1.0 10 < th dose independent rect. 2 1
225 86.89 temperature 20.0 30 > th dose independent rect. 2 1
226 86.89 humidity 90.0 30 > th dose independent rect. 2 1
230 86.90 atmosphere 1005.0 30 > th dose independent rect. 2 1
245 86.92 wind 9.0 1440 < th dose independent rect. 3 1
246 86.92 temperature 10.0 1440 > th dose independent rect. 3 1
249 86.92 temperature 30.0 1440 < th dose independent rect. 3 1
254 86.92 humidity 50.0 1440 > th dose independent rect. 3 1
263 86.92 atmosphere 995.0 1440 > th dose independent rect. 3 1
264 86.92 radiation 1.0 1440 < th dose independent rect. 3 1
284 86.92 temperature 10.0 1440 > th dose independent rect. 4 23
295 86.93 atmosphere 995.0 30 > th dose dependent rect. 2 1
298 86.94 temperature 10.0 30 > th dose independent rect. 2 1
300 86.94 temperature 30.0 30 < th dose independent rect. 2 1
301 86.94 humidity 50.0 30 > th dose independent rect. 2 1
305 86.94 atmosphere 1010.0 30 < th dose independent rect. 2 1
307 86.94 radiation 1.0 30 < th dose independent rect. 2 1
312 86.94 precipitation 0.1 30 < th dose independent rect. 2 1
313 86.94 temperature 10.0 30 > th dose independent rect. 3 23
315 86.94 humidity 50.0 30 > th dose dependent rect. 2 1
319 86.94 radiation 1.0 30 < th dose dependent rect. 2 1
324 86.94 precipitation 0.1 30 < th dose dependent rect. 2 1
332 86.97 atmosphere 1015.0 30 < th dose dependent rect. 2 1
340 87.04 temperature 30.0 30 < th dose dependent rect. 2 1
348 87.07 wind 1.0 30 < th dose independent rect. 24 3
354 87.09 humidity 80.0 14400 < th dose dependent rect. 4 5
384 87.14 wind 1.0 30 > th dose independent rect. 2 1
386 87.16 precipitation 0.1 30 < th dose independent rect. 3 23
387 87.16 precipitation 0.1 30 < th dose dependent rect. 3 23
391 87.25 wind 9.0 720 < th dose independent rect. 23 16
393 87.26 precipitation 0.1 30 < th dose independent rect. 23 23
394 87.26 precipitation 0.1 30 < th dose dependent rect. 23 23
398 87.35 wind 9.0 30 < th dose independent rect. 3 23
401 87.38 humidity 70.0 14400 > th dose independent rect. 8 1
406 87.44 wind 1.0 10 < th dose independent rect. 13 14
421 87.55 humidity 70.0 14400 > th dose independent rect. 24 9
424 87.56 humidity 70.0 14400 > th dose independent rect. 4 5
428 87.56 humidity 70.0 14400 > th dose independent rect. 22 11
433 87.57 humidity 70.0 14400 < th dose independent rect. 8 1
434 87.57 humidity 70.0 14400 > th dose independent rect. 6 3
449 87.62 wind 1.0 14400 < th dose dependent rect. 6 1
455 87.74 wind 1.0 10 < th dose independent rect. 6 21
457 87.75 temperature 25.0 720 > th dose dependent rect. 3 5
464 87.85 humidity 70.0 14400 < th dose independent rect. 6 3
477 87.86 temperature 25.0 720 > th dose independent rect. 3 6
482 87.91 humidity 50.0 30 > th dose independent rect. 23 23
486 87.96 wind 5.0 14400 < th dose independent rect. 11 1
487 87.96 wind 1.0 720 > th dose independent rect. 15 8
493 87.99 humidity 50.0 720 > th dose independent rect. 23 16
495 88.00 temperature 25.0 270 > th dose independent rect. 19 8
498 88.03 humidity 50.0 30 > th dose independent rect. 3 23
504 88.06 temperature 20.0 30 > th dose dependent rect. 22 5
509 88.12 wind 1.0 14400 < th dose independent rect. 6 1
513 88.16 temperature 30.0 720 < th dose independent rect. 15 8
532 88.22 temperature 20.0 720 > th dose dependent rect. 3 1
535 88.23 humidity 70.0 4320 > th dose dependent rect. 3 8
551 88.26 humidity 90.0 90 < th dose independent rect. 2 1
583 88.29 wind 1.0 14400 < th dose dependent rect. 4 4
590 88.31 humidity 80.0 4320 > th dose independent rect. 3 10
605 88.32 humidity 80.0 4320 < th dose independent rect. 3 10
617 88.34 wind 5.0 14400 < th dose independent rect. 10 5
618 88.34 wind 9.0 720 < th dose independent rect. 11 16
622 88.35 wind 5.0 14400 > th dose independent rect. 11 1
640 88.38 humidity 50.0 4320 > th dose dependent rect. 2 10
643 88.38 humidity 50.0 4320 > th dose dependent rect. 23 14
644 88.38 humidity 90.0 4320 < th dose dependent rect. 23 14
659 88.41 wind 1.0 14400 < th dose independent rect. 4 4
668 88.42 wind 1.0 14400 > th dose independent rect. 4 4
669 88.42 wind 5.0 14400 > th dose independent rect. 10 5
675 88.43 wind 1.0 14400 > th dose independent rect. 5 2
676 88.43 temperature 25.0 270 > th dose independent rect. 22 5
745 88.50 wind 3.0 30 < th dose dependent rect. 22 5
758 88.51 humidity 50.0 4320 > th dose dependent sin 5 NA
759 88.51 humidity 90.0 4320 < th dose dependent sin 5 NA
767 88.52 humidity 50.0 4320 > th dose dependent rect. 11 1
769 88.52 humidity 90.0 4320 < th dose dependent rect. 3 10
820 88.57 humidity 60.0 14400 < th dose dependent rect. 12 1
826 88.57 temperature 25.0 30 > th dose dependent rect. 16 19
835 88.58 humidity 90.0 4320 < th dose dependent rect. 11 1
866 88.60 humidity 80.0 4320 > th dose independent rect. 23 14
869 88.60 wind 1.0 14400 < th dose dependent rect. 4 7
875 88.61 temperature 25.0 720 < th dose independent rect. 2 8
890 88.62 wind 3.0 14400 > th dose dependent rect. 11 1
905 88.63 humidity 80.0 4320 < th dose independent sin 4 NA
915 88.64 humidity 80.0 4320 > th dose independent sin 4 NA
924 88.64 temperature 15.0 90 > th dose dependent rect. 3 8
957 88.66 humidity 70.0 4320 > th dose dependent rect. 7 6
963 88.67 humidity 70.0 4320 > th dose independent rect. 10 1
983 88.67 temperature 25.0 30 > th dose dependent rect. 14 21