BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0127700 Os09g0127700|AK107885
         (121 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31830.1  | chr4:15400803-15401105 REVERSE LENGTH=101          101   9e-23

>AT4G31830.1 | chr4:15400803-15401105 REVERSE LENGTH=101
          Length = 100

 Score =  101 bits (251), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 4  SGTEEWRRNTDTHKMSAEEVRAAGVEASMRPPGRGHGPGEVLHQRGRMPYGPGTMALAGL 63
          +G E+WR+  DT KMS+E V+AAGVE+S RPPG    PG VLHQR  +PY   TMALAGL
Sbjct: 2  AGEEDWRKTADTTKMSSEGVKAAGVESSKRPPG--SNPGGVLHQRRNLPYSYTTMALAGL 59

Query: 64 GIFGVLGYLVLYHKARPGTPATEVAKVAVGHGDP 97
           I G + Y V+Y K +P   AT+VAK A G   P
Sbjct: 60 AISGAIMYTVMYAKKKPEATATDVAKAATGTAKP 93



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,736,456
Number of extensions: 107028
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 105 (45.1 bits)