Os09g0124200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os09g0124200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.14 | 0.326 | 7.4 | 0.367 | 0.318 | -0.488 | 0.346 | 2.46 | 0.313 | 10.9 | 21.19 | 3870 | -- | -- |
| 51.88 | 0.335 | 7.49 | 0.414 | 0.383 | -0.958 | 0.232 | -- | 0.236 | 10.2 | 19 | 21457 | -- | -- |
| 48.61 | 0.325 | 7.4 | 0.374 | 0.317 | -0.499 | -- | 2.41 | 0.314 | 10.7 | 21.18 | 3870 | -- | -- |
| 50.81 | 0.332 | 7.48 | 0.32 | 0.379 | -1.04 | -- | -- | 0.213 | 10.2 | 18.7 | 21504 | -- | -- |
| 54.76 | 0.345 | 7.41 | 0.382 | -- | -0.544 | -- | 2.35 | 0.32 | -- | 21.11 | 3837 | -- | -- |
| 71.64 | 0.397 | 7.56 | -0.653 | 0.343 | -- | 0.214 | -- | -0.0694 | 11 | -- | -- | -- | -- |
| 71.83 | 0.397 | 7.56 | -0.645 | 0.343 | -- | -- | -- | -0.0689 | 10.9 | -- | -- | -- | -- |
| 55.8 | 0.348 | 7.47 | 0.656 | -- | -1.36 | -- | -- | 0.391 | -- | 19.44 | 21020 | -- | -- |
| 52.44 | 0.337 | 7.49 | -- | 0.345 | -0.977 | -- | -- | 0.212 | 10.8 | 18.8 | 18431 | -- | -- |
| 79.11 | 0.416 | 7.57 | -0.652 | -- | -- | -- | -- | -0.0713 | -- | -- | -- | -- | -- |
| 82.79 | 0.426 | 7.54 | -- | 0.348 | -- | -- | -- | 0.00293 | 11 | -- | -- | -- | -- |
| 58.94 | 0.358 | 7.51 | -- | -- | -0.993 | -- | -- | 0.207 | -- | 19 | 18236 | -- | -- |
| 90.34 | 0.444 | 7.55 | -- | -- | -- | -- | -- | 0.00108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 46.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 46.53 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 13 | 46.62 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 14 | 46.81 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 16 | 46.84 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 17 | 46.86 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 29 | 47.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 39 | 47.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 41 | 47.08 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 45 | 47.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 47 | 47.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 58 | 47.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 85 | 47.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 94 | 47.26 | temperature | 15 | 43200 | < th | dose dependent | sin | 11 | NA |
| 96 | 47.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 113 | 47.30 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 168 | 47.39 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 219 | 47.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 237 | 47.50 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 278 | 47.56 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 299 | 47.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 300 | 47.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 312 | 47.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 332 | 47.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 377 | 47.65 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 386 | 47.66 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 394 | 47.67 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 406 | 47.69 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 409 | 47.70 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 433 | 47.74 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 434 | 47.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 440 | 47.74 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 442 | 47.75 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 2 | NA |
| 447 | 47.75 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 480 | 47.79 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 547 | 47.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 572 | 47.91 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 631 | 47.97 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 692 | 48.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 717 | 48.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 732 | 48.06 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 746 | 48.07 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 759 | 48.08 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 773 | 48.09 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 791 | 48.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 832 | 48.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 860 | 48.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 864 | 48.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 871 | 48.22 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 909 | 48.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 927 | 48.28 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 930 | 48.29 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 973 | 48.35 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 981 | 48.36 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 983 | 48.36 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 986 | 48.37 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 987 | 48.37 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 996 | 48.38 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 1 |