BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0124200 Os09g0124200|AK107882
         (71 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34430.4  | chr4:16461069-16464993 FORWARD LENGTH=987           60   3e-10
AT1G21700.1  | chr1:7620156-7623978 REVERSE LENGTH=808             47   2e-06

>AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987
          Length = 986

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 42/68 (61%)

Query: 4   YDKGNLDAGMSQTDFIIMESAEIPGFGGTSWTDQETXXXXXXXXXXQAKWGDIAEHVDTK 63
           ++ G   + MS +DFI+ME AE PG G   WTDQET          +  W +IAEHV TK
Sbjct: 337 FNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATK 396

Query: 64  TKAQCMLH 71
           TKAQCMLH
Sbjct: 397 TKAQCMLH 404



>AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808
          Length = 807

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 4   YDKGNLDAGMSQTDFIIMESAEIPG-FGGTSWTDQETXXXXXXXXXXQAKWGDIAEHVDT 62
           +  G    G S  DF+ ++  +  G   G +WTDQET             W  IA+HV +
Sbjct: 372 FHHGRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGS 431

Query: 63  KTKAQCMLH 71
           K+KAQC+LH
Sbjct: 432 KSKAQCILH 440



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,381,735
Number of extensions: 36599
Number of successful extensions: 55
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)