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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0121600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0271) R2 : 0.223
β1 : -0.418 (0.104) R2dD : 0.0324 R2D : -0.014
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.619 (0.277) R2dE : 0.0205 R2E : -0.108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.7 (2.31) R2dD*E : 0.336 R2D*E : 0.173
γ1 : 0.0153 (0.0586) R2dN8 : 0.000163 R2N8 : -0.00158
σ : 0.499
deviance : 114.83
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 66.59
memory length : 30
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10
open length of G : 1.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.68 0.503 2.9 -0.43 0.00138 -0.634 0.193 -21 0.0138 10.2 66.65 30 10 1.02
135.97 0.547 2.93 -0.109 8.58e-05 1.19 0.0885 -- 0.00838 19.5 66.65 30 10 1.02
114.83 0.499 2.9 -0.418 0.00192 -0.624 -- -20.8 0.0145 14.7 66.59 30 10 1.04
133.05 0.537 2.94 -0.115 0.0208 1.37 -- -- -0.00234 19.1 65 36 9.98 1.02
114.83 0.499 2.9 -0.418 -- -0.619 -- -20.7 0.0153 -- 66.59 30 10 1.03
146.04 0.567 2.91 -0.105 0.0738 -- -0.139 -- 0.101 10.9 -- -- -- --
146.12 0.566 2.91 -0.111 0.0745 -- -- -- 0.101 11.2 -- -- -- --
133.02 0.537 2.94 -0.134 -- 1.47 -- -- 0.00644 -- 64.82 38 9.98 1.02
133.3 0.538 2.94 -- 0.0179 1.44 -- -- 0.0132 20.1 64.91 28 9.99 1.02
146.47 0.566 2.91 -0.112 -- -- -- -- 0.0999 -- -- -- -- --
146.45 0.566 2.91 -- 0.0756 -- -- -- 0.113 11.3 -- -- -- --
133.23 0.538 2.93 -- -- 1.56 -- -- 0.0355 -- 64.78 31 9.98 1.14
146.8 0.566 2.91 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.67 humidity 70.0 30 < th dose dependent rect. 10 1
6 117.37 humidity 70.0 10 < th dose independent rect. 10 1
7 117.47 radiation 10.0 30 > th dose dependent rect. 10 1
10 117.57 atmosphere 1010.0 30 < th dose independent rect. 10 1
13 117.84 temperature 20.0 30 > th dose independent rect. 10 1
14 117.85 radiation 10.0 30 > th dose independent rect. 10 1
16 117.95 wind 3.0 30 < th dose independent rect. 10 1
20 118.05 atmosphere 1000.0 30 > th dose independent rect. 10 1
22 118.07 temperature 10.0 30 > th dose independent rect. 10 1
24 118.07 temperature 30.0 30 < th dose independent rect. 10 1
25 118.07 humidity 50.0 30 > th dose independent rect. 10 1
30 118.07 precipitation 0.1 30 < th dose independent rect. 10 1
31 118.07 temperature 10.0 30 > th dose independent rect. 11 23
32 118.07 precipitation 0.1 30 < th dose dependent rect. 10 1
33 118.09 wind 1.0 30 > th dose independent rect. 10 1
34 118.12 wind 9.0 30 < th dose dependent rect. 10 1
35 118.13 temperature 10.0 30 > th dose dependent rect. 10 1
36 118.15 atmosphere 995.0 30 > th dose dependent rect. 10 1
44 118.50 temperature 10.0 1440 > th dose independent rect. 11 1
48 118.50 atmosphere 995.0 1440 > th dose independent rect. 11 1
51 118.50 precipitation 0.1 1440 < th dose independent rect. 11 1
52 118.50 temperature 10.0 1440 > th dose independent rect. 12 23
55 118.50 wind 1.0 30 < th dose dependent rect. 10 1
56 118.50 precipitation 0.1 1440 < th dose dependent rect. 11 1
58 118.59 atmosphere 1015.0 30 < th dose dependent rect. 10 1
61 119.01 radiation 40.0 30 < th dose independent rect. 10 1
66 119.48 wind 1.0 30 > th dose dependent rect. 10 1
70 119.57 radiation 40.0 30 > th dose dependent rect. 10 1
78 120.20 radiation 40.0 30 < th dose dependent rect. 10 1
80 120.51 humidity 50.0 30 > th dose dependent rect. 10 1
116 125.69 atmosphere 995.0 30 > th dose independent rect. 11 23
118 125.92 wind 9.0 30 < th dose independent rect. 11 23
120 126.29 temperature 30.0 30 < th dose independent rect. 11 23
122 127.22 precipitation 0.1 30 < th dose independent rect. 11 23
123 127.22 precipitation 0.1 30 < th dose dependent rect. 11 23
128 128.17 humidity 70.0 30 < th dose independent rect. 8 3
145 132.31 humidity 70.0 30 < th dose independent rect. 17 18
172 133.48 temperature 25.0 90 > th dose dependent rect. 6 5
227 134.09 humidity 80.0 30 < th dose dependent rect. 17 18
229 134.22 humidity 50.0 30 > th dose independent rect. 11 23
230 134.27 temperature 30.0 30 < th dose dependent rect. 10 1
231 134.30 temperature 25.0 90 > th dose dependent rect. 20 15
243 134.59 humidity 80.0 30 < th dose dependent rect. 23 12
275 134.73 humidity 80.0 30 < th dose dependent rect. 19 16
524 136.95 radiation 10.0 30 > th dose dependent rect. 6 5
583 137.28 temperature 25.0 270 > th dose independent rect. 6 5
628 137.41 temperature 25.0 90 > th dose dependent sin 7 NA
768 137.90 radiation 40.0 90 > th dose independent sin 11 NA
834 138.19 atmosphere 1015.0 30 < th dose independent rect. 11 23
902 138.47 radiation 40.0 90 > th dose dependent sin 12 NA
923 138.56 wind 1.0 30 > th dose independent rect. 11 23
995 138.91 temperature 30.0 10 < th dose independent rect. 11 8