BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0121600 Os09g0121600|Os09g0121600
(430 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263 203 2e-52
ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241 134 7e-32
ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112 55 5e-08
>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
Length = 1262
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 3/319 (0%)
Query: 82 LGFKRSPSEHAIYVRRNGNAQLVVGVYVDDLMITGSNYDDIRQFKKEMAAAFKMSDLGQL 141
GF +S S+H +++ L V VYVDD++I +N + + K ++ + FK+ DLG L
Sbjct: 257 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316
Query: 142 HYYLSIEVKQSASGILLSQGAYATKNLEKCGMEGCNQCQVPMETRLKRSKFSSEPSVDAT 201
Y+L +E+ +SA+GI + Q YA L++ G+ GC VPM+ + S S VDA
Sbjct: 317 KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 376
Query: 202 AYRSIVRSLRYLVNTCLDLAFAVGYASRFLEDPREDHLAAVKHILHYVAGTKNLGVWFSR 261
AYR ++ L YL T LD++FAV S+F E PR H AV ILHY+ GT G+++S
Sbjct: 377 AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 262 KVEKEAYLRGFSDSGYAGDVDARKSMTGVIFFLGSSPITWQSMKQKVVVQSSCEVEYIVX 321
+ E + L+ FSD+ + D R+S G FLG+S I+W+S KQ+VV +SS E EY
Sbjct: 437 QAEMQ--LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494
Query: 322 XXXXXXXXXXXRVLAEVQGSTPRAPMLRVDNKSAISLTKNPVLHGQSKHIQVKYHLARE- 380
+ E+Q + +L DN +AI + N V H ++KHI+ H RE
Sbjct: 495 SFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554
Query: 381 AAENGLINVEFIRSEEQLG 399
+ ++ F +EQ G
Sbjct: 555 SVYQATLSYSFQAYDEQDG 573
>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
Length = 240
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 3/212 (1%)
Query: 107 VYVDDLMITGSNYDDIRQFKKEMAAAFKMSDLGQLHYYLSIEVKQSASGILLSQGAYATK 166
+YVDD+++TGS+ + ++++ F M DLG +HY+L I++K SG+ LSQ YA +
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 167 NLEKCGMEGCNQCQVPMETRLKRSKFSSEPSVDATAYRSIVRSLRYLVNTCLDLAFAVGY 226
L GM C P+ +L S S+ D + +RSIV +L+YL T D+++AV
Sbjct: 65 ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 227 ASRFLEDPREDHLAAVKHILHYVAGTKNLGVWFSRKVEKEAYLRGFSDSGYAGDVDARKS 286
+ + +P +K +L YV GT G++ + + ++ F DS +AG R+S
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN--VQAFCDSDWAGCTSTRRS 181
Query: 287 MTGVIFFLGSSPITWQSMKQKVVVQSSCEVEY 318
TG FLG + I+W + +Q V +SS E EY
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEY 213
>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
Length = 111
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 212 YLVNTCLDLAFAVGYASRFLEDPREDHLAAVKHILHYVAGTKNLGVWFSRKVEKEAYLRG 271
YL T DL FAV S+F R + AV +LHYV GT G+++S + L+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYS--ATSDLQLKA 59
Query: 272 FSDSGYAGDVDARKSMTGV-----IFFLGS 296
F+DS +A D R+S+TG ++FLG+
Sbjct: 60 FADSDWASCPDTRRSVTGFCSLVPLWFLGA 89
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,671,049
Number of extensions: 336136
Number of successful extensions: 716
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 329
Effective length of database: 8,337,553
Effective search space: 2743054937
Effective search space used: 2743054937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)