Os09g0121000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMC protein, N-terminal domain containing protein.
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Os09g0121000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMC protein, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.27 | 0.241 | 9.28 | 0.883 | 0.179 | -0.957 | 0.0399 | 1.08 | 0.409 | 23.8 | 24.31 | 30 | -- | -- |
| 26.76 | 0.241 | 9.3 | 0.739 | 0.2 | -0.847 | -0.102 | -- | 0.366 | 24 | 24.2 | 41 | -- | -- |
| 26.26 | 0.239 | 9.28 | 0.877 | 0.177 | -0.957 | -- | 1.03 | 0.41 | 23.9 | 24.25 | 26 | -- | -- |
| 26.8 | 0.241 | 9.3 | 0.744 | 0.203 | -0.847 | -- | -- | 0.367 | 23.9 | 24.2 | 41 | -- | -- |
| 27.74 | 0.245 | 9.27 | 0.934 | -- | -1.1 | -- | 1.29 | 0.442 | -- | 24.19 | 18 | -- | -- |
| 37.99 | 0.289 | 9.32 | 0.605 | 0.5 | -- | 0.073 | -- | 0.271 | 2.01 | -- | -- | -- | -- |
| 38.01 | 0.289 | 9.32 | 0.603 | 0.5 | -- | -- | -- | 0.27 | 2.01 | -- | -- | -- | -- |
| 28.52 | 0.249 | 9.29 | 0.774 | -- | -0.996 | -- | -- | 0.394 | -- | 24.1 | 18 | -- | -- |
| 40.56 | 0.298 | 9.33 | -- | 0.265 | -0.662 | -- | -- | 0.25 | 1.27 | 24.84 | 23 | -- | -- |
| 53.05 | 0.34 | 9.32 | 0.624 | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
| 47.59 | 0.323 | 9.34 | -- | 0.511 | -- | -- | -- | 0.203 | 2.04 | -- | -- | -- | -- |
| 43.55 | 0.308 | 9.32 | -- | -- | -0.886 | -- | -- | 0.278 | -- | 24.6 | 25 | -- | -- |
| 63.31 | 0.371 | 9.33 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 2 | 26.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 8 | 26.36 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 19 | 26.45 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 42 | 26.53 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 49 | 26.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 115 | 26.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 125 | 26.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 152 | 26.99 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 169 | 27.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 212 | 27.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 301 | 27.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 308 | 27.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 313 | 27.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 376 | 27.97 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 388 | 28.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 402 | 28.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 441 | 28.15 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 575 | 28.37 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 640 | 28.46 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 729 | 28.59 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 827 | 28.75 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 2 |
| 879 | 28.82 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 10 |