BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0121000 Os09g0121000|AJ535213
(398 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61460.1 | chr5:24714551-24721841 REVERSE LENGTH=1058 418 e-117
AT5G07660.1 | chr5:2422839-2429912 FORWARD LENGTH=1059 411 e-115
AT5G15920.1 | chr5:5196210-5199559 FORWARD LENGTH=1054 77 1e-14
AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172 50 2e-06
>AT5G61460.1 | chr5:24714551-24721841 REVERSE LENGTH=1058
Length = 1057
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/385 (54%), Positives = 276/385 (71%)
Query: 2 AGTISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAA 61
+G+I RI++ENFMCHS+L IE G+ VNFITGQNGSGKSA+LTALC+AFG RA+ TQRAA
Sbjct: 19 SGSILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAAT 78
Query: 62 LKDFIKTDCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGNKVAH 121
LKDFIKT CSYA + V++ N GEDAFKPE+YG ++ +ERRITES+++ LKD G KV++
Sbjct: 79 LKDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATATVLKDYLGKKVSN 138
Query: 122 RKDDLIEIIEHFNIDVENPCVIMSQDKSREFLHSGNNXXXXXXXXXATLLQHVNDLLLAI 181
++D+L E++EHFNIDVENPCV+MSQDKSREFLHSGN+ ATLLQ VNDLL +I
Sbjct: 139 KRDELRELVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSI 198
Query: 182 RELLDNADSVVQELEKSIKPAMMELDELQQKIKNMEHIEEIAHEIDNLKKKLAWSWVYDV 241
E L A ++V ELE +IKP E+ EL+ KIKNME +EEIA + LKKKLAWSWVYDV
Sbjct: 199 YEHLTKATAIVDELENTIKPIEKEISELRGKIKNMEQVEEIAQRLQQLKKKLAWSWVYDV 258
Query: 242 DRQIEEQTVKLLKLKERIPACQEKIDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMK 301
DRQ++EQT K++KLKERIP CQ KID + L++ LT K+ L+++S +
Sbjct: 259 DRQLQEQTEKIVKLKERIPTCQAKIDWELGKVESLRDTLTKKKAQVACLMDESTAMKREI 318
Query: 302 EKLEDDIAQAVALKIELEREHVRGTNVLKNMNNRVKQLQKQIHDFREQYIQYTQDESSKA 361
E AV KI L+ E N ++ + +RV++L++Q+ D EQ ++ TQ E S+
Sbjct: 319 ESFHQSAKTAVREKIALQEEFNHKCNYVQKIKDRVRRLERQVGDINEQTMKNTQAEQSEI 378
Query: 362 ENDKCEIQKEINSLHSNVTRLKEEE 386
E +++E+ + + +RLKEEE
Sbjct: 379 EEKLKYLEQEVEKVETLRSRLKEEE 403
>AT5G07660.1 | chr5:2422839-2429912 FORWARD LENGTH=1059
Length = 1058
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/388 (53%), Positives = 280/388 (72%), Gaps = 6/388 (1%)
Query: 2 AGTISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAA 61
+G I RIRLENFMCHS+L IE G VNFITGQNGSGKSA+LTALC+AFG RA+ TQRAA
Sbjct: 20 SGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAAT 79
Query: 62 LKDFIKTDCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGNKVAH 121
LKDFIKT CSYA + V++ NQGEDAFKPE+YGD + +ERRI++S+S LKD G K++
Sbjct: 80 LKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISS 139
Query: 122 RKDDLIEIIEHFNIDVENPCVIMSQDKSREFLHSGNNXXXXXXXXXATLLQHVNDLLLAI 181
RK++L E++EH+NIDVENPCVIMSQDKSREFLHSGN+ ATLLQ V+D+L +I
Sbjct: 140 RKEELRELVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDILQSI 199
Query: 182 RELLDNADSVVQELEKSIKPAMMELDELQQKIKNMEHIEEIAHEIDNLKKKLAWSWVYDV 241
L++A++++ E+EK+IKP E++EL +KIKNMEH+EEI ++ +LKKKLAWSWVYDV
Sbjct: 200 GTKLNSANALLDEMEKTIKPIEKEINELLEKIKNMEHVEEITQQVLHLKKKLAWSWVYDV 259
Query: 242 DRQIEEQTVKLLKLKERIPACQEKIDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMK 301
DRQ++EQ K++K KER+P CQ KID + L+ LT+K+ L+++S T MK
Sbjct: 260 DRQLKEQNEKIVKFKERVPTCQNKIDRKLGEVESLRVSLTEKKAQVACLIDES---TAMK 316
Query: 302 EKLE---DDIAQAVALKIELEREHVRGTNVLKNMNNRVKQLQKQIHDFREQYIQYTQDES 358
+LE + +A KI LE E+ + ++ + +RV++L++QI D E I+ TQ E
Sbjct: 317 RELECLRQSMKKAAREKIALEEEYHHKCSNIQKIKDRVRRLERQIEDINEMTIRSTQVEQ 376
Query: 359 SKAENDKCEIQKEINSLHSNVTRLKEEE 386
S+ E ++ E+ S V+ LKEEE
Sbjct: 377 SEIEGKLNQLTVEVEKAESLVSSLKEEE 404
>AT5G15920.1 | chr5:5196210-5199559 FORWARD LENGTH=1054
Length = 1053
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 47/295 (15%)
Query: 1 MAGTISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAA 60
+ G I I L NFM + L + G +N + G NGSGKS+++ A+ + G + RA
Sbjct: 19 LPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRAT 78
Query: 61 ALKDFIKT--DCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGNK 118
++ ++K D Y I + N + E+ + + R+I + S ++ + G+
Sbjct: 79 SVGAYVKRGEDSGYVKISLRGNTREEN----------LTIFRKIDTRNKSEWMFN--GST 126
Query: 119 VAHRKDDLIEIIEHFNIDVENPCVIMSQDKSREFLHSGNNXXXXXXXXXATLLQH----V 174
V+ K D++EII+ FNI V N + QD+ EF LL+ V
Sbjct: 127 VS--KKDIVEIIQKFNIQVNNLTQFLPQDRVCEF----------AKLTPVQLLEETEKAV 174
Query: 175 NDLLLAI--RELLDNADSVVQELEKSIKPAMMELDELQQKI----KNMEHI---EEIAHE 225
D L + R L++ + + Q LE+++ L++L+ + K++E + E +
Sbjct: 175 GDPQLPVHHRALVEKSRDLKQ-LERAVAKNGETLNQLKALVDEQEKDVERVRQRELFLTK 233
Query: 226 IDNLKKKLAWSWVYDVDRQIEEQTVKLLKLKERIPACQEKIDGHAAMIVKLKEEL 280
+D++KKKL W YD+ + + + K+R+ ++K+D A + +KE +
Sbjct: 234 VDSMKKKLPW-LKYDMKK------AEYMDAKKRMKEAEKKLDEAAKNLNSMKEPI 281
>AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172
Length = 1171
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 173/377 (45%), Gaps = 37/377 (9%)
Query: 5 ISRIRLENFMCHSSLHIELG--QHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAAL 62
I I LE F +++ + G H N ITG NGSGKS +L ++C G RAA L
Sbjct: 3 IKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAANL 62
Query: 63 KDFI----KTDCSYAAIIVDINNQGEDAFKPEVYGD--LVRLERRITESSSSMFLKDQHG 116
++ + + + A + V +N E P + D + + R+I + +L +
Sbjct: 63 QELVYKQGQAGITRATVSVTFDN-SERNRSPLGHEDHSEITVTRQIVVGGKNKYLIN--- 118
Query: 117 NKVAHRKDDLIEIIEHFNIDVENPCVIMSQDKSREFLHSGNNXXXXXXXXXATLLQHVND 176
K+A + + + + ++V NP ++ Q + + L+ A + N
Sbjct: 119 GKLA-QPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAGTRMYENK 177
Query: 177 LLLAIREL---LDNADSVVQELEKSIKPAMMELDELQQKIKNMEHIEEIAHEIDNLKKKL 233
A++ L D + + LEK I PA+ +L ++K + M+ A E+D L K+
Sbjct: 178 KEAALKTLEKKQTKVDEINKLLEKDILPALEKLR--REKSQYMQWANGNA-ELDRL-KRF 233
Query: 234 AWSWVYDVDRQIEEQTVKLL-KLKERIPACQEKIDGHAAMIVKLKEELTDKERNARSLVE 292
++ Y +I + ++ ++ ++K ++ E+ D K + E+++ E+ ++L +
Sbjct: 234 CVAFEYVQAEKIRDNSIHVVEEMKIKMTGIDEQTD-------KTQGEISELEKQIKALTQ 286
Query: 293 KSREVTMMKE--KLEDDIAQAVALKIELEREHVRGTNVLKNMNNRVKQLQKQIHDFREQY 350
+RE +M E L D + +L E+ RE + TN+ + K +K +H+ +
Sbjct: 287 -AREASMGGEVKALSDKVD---SLSNEVTRELSKLTNMEDTLQGEEKNAEKMVHNIED-- 340
Query: 351 IQYTQDESSKAENDKCE 367
++ + +E + A N KC+
Sbjct: 341 LKKSVEERASALN-KCD 356
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,959,369
Number of extensions: 329102
Number of successful extensions: 2299
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2324
Number of HSP's successfully gapped: 10
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)