Os09g0110400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3).
FiT-DB / Search/ Help/ Sample detail
|
Os09g0110400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.22 | 0.189 | 11.2 | 1.57 | 0.755 | -0.801 | -0.0471 | 0.282 | 0.388 | 17.1 | 10.28 | 360 | -- | -- |
| 16.27 | 0.188 | 11.2 | 1.53 | 0.759 | -0.802 | 0.00671 | -- | 0.377 | 17.1 | 14.21 | 364 | -- | -- |
| 16.22 | 0.188 | 11.2 | 1.57 | 0.754 | -0.801 | -- | 0.249 | 0.387 | 17.1 | 10.29 | 370 | -- | -- |
| 16.27 | 0.188 | 11.2 | 1.53 | 0.756 | -0.796 | -- | -- | 0.376 | 17.1 | 14.09 | 364 | -- | -- |
| 29.32 | 0.252 | 11.1 | 1.66 | -- | -0.714 | -- | 0.44 | 0.409 | -- | 14.51 | 1254 | -- | -- |
| 23.09 | 0.225 | 11.2 | 1.35 | 0.533 | -- | -0.141 | -- | 0.261 | 17 | -- | -- | -- | -- |
| 23.14 | 0.225 | 11.2 | 1.35 | 0.532 | -- | -- | -- | 0.26 | 17 | -- | -- | -- | -- |
| 29.36 | 0.252 | 11.2 | 1.55 | -- | -0.715 | -- | -- | 0.376 | -- | 12 | 1258 | -- | -- |
| 71.33 | 0.393 | 11.2 | -- | 0.521 | -0.0473 | -- | -- | 0.114 | 17 | 11.4 | 195 | -- | -- |
| 38.05 | 0.288 | 11.2 | 1.33 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 71.35 | 0.395 | 11.2 | -- | 0.508 | -- | -- | -- | 0.11 | 17 | -- | -- | -- | -- |
| 81.38 | 0.42 | 11.2 | -- | -- | 0.353 | -- | -- | 0.0706 | -- | 24.2 | 216 | -- | -- |
| 84.92 | 0.43 | 11.2 | -- | -- | -- | -- | -- | 0.0988 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 3 | 15.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 15.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 37 | 16.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 48 | 16.42 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 51 | 16.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 71 | 16.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 74 | 16.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 113 | 16.72 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 127 | 16.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 129 | 16.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 130 | 16.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 158 | 16.75 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 564 | 16.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 771 | 16.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 909 | 16.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 992 | 17.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |