BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0110400 Os09g0110400|AK068844
(330 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G15430.1 | chr2:6733661-6735482 FORWARD LENGTH=320 461 e-130
AT2G15400.1 | chr2:6713022-6714386 FORWARD LENGTH=320 426 e-120
AT1G60850.2 | chr1:22398078-22400155 REVERSE LENGTH=376 117 8e-27
AT1G60620.1 | chr1:22331225-22333370 FORWARD LENGTH=386 116 2e-26
>AT2G15430.1 | chr2:6733661-6735482 FORWARD LENGTH=320
Length = 319
Score = 461 bits (1187), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/328 (69%), Positives = 266/328 (81%), Gaps = 15/328 (4%)
Query: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
G +YQRFP+++IRELKDDYAKFELR+TD SMANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
NDEFIAHRLGLIPLTS AM+MRFSRDCDACDGDG CE+CSVEF L+++ +DQTL+VT
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCV-TDQTLDVT 121
Query: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186
S DL S DP V PVD T + +++ +GI+IVKLRRGQEL+LRAIARK
Sbjct: 122 SRDLYSADPTVTPVD----------FTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARK 171
Query: 187 GIGKDHAKWSPAATVTFMYEPEIRINXXXXXXXXXXXKRNLVESSPTKVFNIDPNTQQVV 246
GIGKDHAKWSPAATVTFMYEP+I IN K +L+ESSPTKVF +DP T+QVV
Sbjct: 172 GIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVV 231
Query: 247 VEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQ 306
V D EAYTYD+EVIKKA+AMGKPGLIEI+ K+DSFIFTVE+TGA+ A +L++NAI +L+Q
Sbjct: 232 VVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQ 291
Query: 307 KLDAVRLQDD----DADLGELGAHLVGG 330
KLDAVRL DD D GELGAH+ GG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319
>AT2G15400.1 | chr2:6713022-6714386 FORWARD LENGTH=320
Length = 319
Score = 426 bits (1095), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/328 (65%), Positives = 256/328 (78%), Gaps = 15/328 (4%)
Query: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
GV+YQRFP V+IRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSSVL
Sbjct: 3 GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62
Query: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
NDEFIA RL LIPLTS AM+MRF +DC+ C+GD CE+CSVEF L+A+ +DQTL+VT
Sbjct: 63 NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCV-TDQTLDVT 121
Query: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186
S DL S DP V PVD T+ +++ +GI+I KLRRGQEL+L+A+ARK
Sbjct: 122 SRDLYSADPTVTPVDFTSNSS----------TSDSSEHKGIIIAKLRRGQELKLKALARK 171
Query: 187 GIGKDHAKWSPAATVTFMYEPEIRINXXXXXXXXXXXKRNLVESSPTKVFNIDPNTQQVV 246
GIGKDHAKWSPAATVT+MYEP+I IN K +L+ESSPTKVF IDP T QVV
Sbjct: 172 GIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVV 231
Query: 247 VEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQ 306
V D EAYTYD+EVIKKA+AMGKPGLIEI+ K DSF+FTVE+TGA+ A +L++NAI +L+Q
Sbjct: 232 VVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQ 291
Query: 307 KLDAVRLQDD----DADLGELGAHLVGG 330
KLDA+RL D+ D GELGAH+ G
Sbjct: 292 KLDAIRLSDNTVEADDQFGELGAHMREG 319
>AT1G60850.2 | chr1:22398078-22400155 REVERSE LENGTH=376
Length = 375
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 28/319 (8%)
Query: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
G Y F +V + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
DE +AHR+GLIP+ + + S + D + E ++ F L + + L+V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 127 SNDL----------RSTDPKVCPVDQARAYQHALGGTEPF-DTAAAADQRGILIVKLRRG 175
++DL R ++ K ++ + F + ILI KL G
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 240
Query: 176 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINXXXXXXXXXXXKRNLVESSPTKV 235
QE+ L A A KGIGK HAKWSP T + PE+ + LV P V
Sbjct: 241 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 296
Query: 236 FNID---PNTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAIT 292
F+I+ ++ V T E ++ D + +++ + ++ FIF +E+TG++
Sbjct: 297 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 353
Query: 293 AYELIMNAITVLRQKLDAV 311
L A+ +L K +A+
Sbjct: 354 PEVLFTEAVKILEAKCEAI 372
>AT1G60620.1 | chr1:22331225-22333370 FORWARD LENGTH=386
Length = 385
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 143/303 (47%), Gaps = 36/303 (11%)
Query: 28 FELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAMA 87
F++ A +ANA RR+++AE+P++AI+ V + N+SV+ DE +AHRLGLIP+ + +
Sbjct: 95 FDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRLGLIPIAADPRLF 154
Query: 88 MRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVTSNDLR---------------S 132
S + D E ++ F L + D +V +++L+ +
Sbjct: 155 EYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSELIKESGGST 208
Query: 133 TDPKVCPVDQARAYQHALGGTEPF-DTAAAADQRGILIVKLRRGQELRLRAIARKGIGKD 191
T PK ++ H+ F + + ILI KL GQE+ L A A KGIGK
Sbjct: 209 TTPKT-----YTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGIGKT 263
Query: 192 HAKWSPAATVTFMYEPEIRINXXXXXXXXXXXKRNLVESSPTKVFNIDPNTQ---QVVVE 248
HAKWSP AT + PE+ + LV+ P KVF+I+ Q + V
Sbjct: 264 HAKWSPVATAWYRMLPEVVL----LKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVA 319
Query: 249 DAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKL 308
+ E I+ D + +++ ++ FIFT+E+TG+ L A+ +L K
Sbjct: 320 RPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKC 377
Query: 309 DAV 311
+ V
Sbjct: 378 ERV 380
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,312,205
Number of extensions: 237358
Number of successful extensions: 582
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)