Os09g0110300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative cyclase family protein.
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Os09g0110300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative cyclase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.27 | 0.721 | 5.35 | 2.84 | 1.1 | -1.94 | -0.00951 | -2.39 | 1.85 | 6.41 | 20.11 | 24370 | -- | -- |
| 239.52 | 0.721 | 5.35 | 3.05 | 1.05 | -2.01 | -0.21 | -- | 1.85 | 6.4 | 21.18 | 25498 | -- | -- |
| 229.99 | 0.706 | 5.37 | 2.79 | 1.02 | -2.14 | -- | -2.23 | 1.83 | 6.45 | 40.04 | 24075 | -- | -- |
| 236.33 | 0.716 | 5.36 | 2.76 | 1.05 | -2.24 | -- | -- | 1.9 | 6.59 | 40.03 | 25524 | -- | -- |
| 284.95 | 0.786 | 5.35 | 2.72 | -- | -2.09 | -- | -2.1 | 1.9 | -- | 40.59 | 22502 | -- | -- |
| 388.76 | 0.924 | 5.51 | 3.04 | 1.09 | -- | -0.0869 | -- | 1.16 | 6.75 | -- | -- | -- | -- |
| 388.78 | 0.923 | 5.51 | 3.03 | 1.09 | -- | -- | -- | 1.16 | 6.75 | -- | -- | -- | -- |
| 292.55 | 0.797 | 5.36 | 2.76 | -- | -2.33 | -- | -- | 1.97 | -- | 40.07 | 25319 | -- | -- |
| 339.65 | 0.858 | 5.42 | -- | 1.09 | -2.8 | -- | -- | 1.54 | 5.79 | 38 | 25518 | -- | -- |
| 451.03 | 0.992 | 5.54 | 3.06 | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
| 631.43 | 1.18 | 5.59 | -- | 1.13 | -- | -- | -- | 0.818 | 6.59 | -- | -- | -- | -- |
| 384.89 | 0.914 | 5.48 | -- | -- | -3.12 | -- | -- | 1.43 | -- | 38.99 | 26757 | -- | -- |
| 697.87 | 1.23 | 5.61 | -- | -- | -- | -- | -- | 0.838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.45 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 2 | 235.87 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 4 | 238.93 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 5 | 239.66 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 6 | 239.86 | radiation | 20 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 8 | 239.86 | radiation | 20 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 10 | 239.87 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 20 | 240.03 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 24 | 241.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 25 | 242.24 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 41 | 243.20 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 43 | 243.35 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 58 | 244.27 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 67 | 245.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 68 | 245.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 91 | 246.38 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 92 | 246.39 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 97 | 246.64 | radiation | 10 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 98 | 246.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 9 | 14 |
| 101 | 246.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 104 | 246.79 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 108 | 246.81 | radiation | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 142 | 247.32 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 159 | 247.41 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 174 | 247.61 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 177 | 247.72 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 181 | 247.75 | humidity | 80 | 43200 | < th | dose dependent | sin | 22 | NA |
| 243 | 248.30 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 291 | 248.70 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 381 | 249.14 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 407 | 249.24 | humidity | 70 | 43200 | < th | dose independent | sin | 20 | NA |
| 412 | 249.27 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 476 | 249.52 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 496 | 249.59 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 519 | 249.66 | humidity | 80 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 553 | 249.75 | radiation | 20 | 14400 | < th | dose independent | sin | 9 | NA |
| 566 | 249.80 | humidity | 80 | 43200 | < th | dose dependent | no | NA | NA |
| 570 | 249.81 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 589 | 249.92 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 600 | 250.00 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 627 | 250.10 | humidity | 70 | 43200 | < th | dose independent | sin | 12 | NA |
| 636 | 250.14 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 652 | 250.21 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 658 | 250.24 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 682 | 250.40 | humidity | 70 | 43200 | > th | dose independent | sin | 11 | NA |
| 761 | 250.86 | temperature | 25 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 775 | 250.98 | humidity | 70 | 43200 | > th | dose independent | sin | 21 | NA |
| 828 | 251.25 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 829 | 251.25 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 841 | 251.29 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 844 | 251.30 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 855 | 251.36 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 894 | 251.59 | temperature | 25 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 965 | 251.90 | temperature | 25 | 43200 | > th | dose independent | sin | 7 | NA |
| 968 | 251.91 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |