BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0110300 Os09g0110300|AK061798
(267 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35220.1 | chr4:16752636-16753966 FORWARD LENGTH=273 328 2e-90
AT1G44542.1 | chr1:16865145-16866573 REVERSE LENGTH=272 313 5e-86
AT4G34180.1 | chr4:16370060-16371383 REVERSE LENGTH=256 313 8e-86
>AT4G35220.1 | chr4:16752636-16753966 FORWARD LENGTH=273
Length = 272
Score = 328 bits (840), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/251 (64%), Positives = 195/251 (77%), Gaps = 5/251 (1%)
Query: 16 TAEPAHPGYAEGDGSSCDXXXXXXXXXXXXFDGGRIVDISHYYREEMPEWESADGTGGGF 75
A P+ PG A DG D + G+I DISH Y EMP W+S++G G F
Sbjct: 26 NAYPSIPGTAPIDGGFTDELKPIRREV---YGNGKIYDISHRYTPEMPSWDSSEGIGR-F 81
Query: 76 LRLVRSMRNGSDIANFSELRLTAHSGTHVDAPGHVFDHYYHAGFDVDTLDLAILNGPALL 135
L L SM+NGS +AN SE+++ H+GTHVD+PGHV+D YY AGFDVD+LDL +LNG ALL
Sbjct: 82 LWLAASMKNGS-LANNSEMKIPTHTGTHVDSPGHVYDKYYDAGFDVDSLDLQVLNGLALL 140
Query: 136 VDVPRDSNITANVMESLHIPKGVRRVLFRTLNTDRKLMWKKEFDTSYVGFMKDGAQWLID 195
VDVP+D NITA VM+SLHIPKGV RVLFRTLNTDR+LM+KKEFDTSYVGFMKDGAQWL+D
Sbjct: 141 VDVPKDKNITAEVMKSLHIPKGVSRVLFRTLNTDRRLMFKKEFDTSYVGFMKDGAQWLVD 200
Query: 196 NTDIRLVGVDYLSVGAFDECIPAHLVFLEKREVILVEALHLEHVTPGIYTLHCLPLRLRG 255
NTDI+LVG+DYLSV A+D+ IP+HLVFL+ RE ILVE L L+ V G+Y++HCLPLRL G
Sbjct: 201 NTDIKLVGIDYLSVAAYDDLIPSHLVFLKDRETILVEGLKLDGVKAGLYSVHCLPLRLVG 260
Query: 256 SEGSPARCILI 266
+EGSP RCILI
Sbjct: 261 AEGSPIRCILI 271
>AT1G44542.1 | chr1:16865145-16866573 REVERSE LENGTH=272
Length = 271
Score = 313 bits (803), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 183/223 (82%), Gaps = 3/223 (1%)
Query: 46 FDGGR-IVDISHYYREEMPEWESADGTGGGFLRLVRSMRNGSDIANFSELRLTAHSGTHV 104
+DG R I DISH Y E+P WES++G G FLRL SM+NGSD AN S++ L+ HSGTHV
Sbjct: 51 YDGERKIYDISHQYTPELPVWESSEGLGN-FLRLAVSMKNGSD-ANISKMELSVHSGTHV 108
Query: 105 DAPGHVFDHYYHAGFDVDTLDLAILNGPALLVDVPRDSNITANVMESLHIPKGVRRVLFR 164
DAPGH DHYY +GFD D+LDL ILNGPALLVDVPRD NI+A VM+SLHIP+G+RRVLF+
Sbjct: 109 DAPGHFHDHYYESGFDTDSLDLQILNGPALLVDVPRDKNISAEVMKSLHIPRGIRRVLFK 168
Query: 165 TLNTDRKLMWKKEFDTSYVGFMKDGAQWLIDNTDIRLVGVDYLSVGAFDECIPAHLVFLE 224
TLNTDR+LM+KKEFD+S+VGFM DGA+WL++NTDI+LVG+DYLS A+DE H LE
Sbjct: 169 TLNTDRRLMFKKEFDSSFVGFMVDGAKWLVENTDIKLVGLDYLSFAAYDEAPATHRFILE 228
Query: 225 KREVILVEALHLEHVTPGIYTLHCLPLRLRGSEGSPARCILIK 267
+R++I VEAL L+ V G+YTLHCLPLRL G+EG+P RCILIK
Sbjct: 229 RRDIIPVEALKLDDVEVGMYTLHCLPLRLVGAEGAPTRCILIK 271
>AT4G34180.1 | chr4:16370060-16371383 REVERSE LENGTH=256
Length = 255
Score = 313 bits (801), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 181/222 (81%), Gaps = 1/222 (0%)
Query: 46 FDGGRIVDISHYYREEMPEWESADGTGGGFLRLVRSMRNGSDIANFSELRLTAHSGTHVD 105
++GG+I DISH Y E+P WES++G G FLRL SM+NGS AN SE++L+ HSGTHVD
Sbjct: 35 YEGGKIYDISHRYTPEIPAWESSEGLGKTFLRLAASMKNGS-FANVSEMKLSVHSGTHVD 93
Query: 106 APGHVFDHYYHAGFDVDTLDLAILNGPALLVDVPRDSNITANVMESLHIPKGVRRVLFRT 165
APGH +D+YY AGFD D+LDL +LNGPALLVDVPRD NITA VMESLHI +GVRRVLFRT
Sbjct: 94 APGHFWDNYYDAGFDTDSLDLQVLNGPALLVDVPRDKNITAEVMESLHIQRGVRRVLFRT 153
Query: 166 LNTDRKLMWKKEFDTSYVGFMKDGAQWLIDNTDIRLVGVDYLSVGAFDECIPAHLVFLEK 225
NTD++LM+KKEFD+S+ GFM DGA+WL++NTDI+L+G+DYLS AF+E H V L+
Sbjct: 154 SNTDKRLMFKKEFDSSFAGFMTDGAKWLVENTDIKLIGLDYLSFAAFEESPATHRVILKG 213
Query: 226 REVILVEALHLEHVTPGIYTLHCLPLRLRGSEGSPARCILIK 267
R++I VEAL L+ V G Y+LHCLPLRL G+EG+P RCILIK
Sbjct: 214 RDIIPVEALKLDGVEVGTYSLHCLPLRLVGAEGAPTRCILIK 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,004,251
Number of extensions: 255170
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)