Os09g0103500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pseudouridine synthase domain containing protein.
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Os09g0103500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pseudouridine synthase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.57 | 0.292 | 7.21 | -0.737 | 0.816 | -1.8 | 0.65 | 0.481 | -0.0676 | 17.7 | 9.334 | 59 | -- | -- |
| 38.74 | 0.29 | 7.22 | -0.806 | 0.819 | -1.8 | 0.706 | -- | -0.0844 | 17.7 | 12.04 | 59 | -- | -- |
| 39.51 | 0.293 | 7.2 | -0.701 | 0.813 | -1.79 | -- | 0.8 | -0.0558 | 17.7 | 8.365 | 58 | -- | -- |
| 40.03 | 0.295 | 7.22 | -0.812 | 0.818 | -1.77 | -- | -- | -0.0865 | 17.7 | 9.181 | 58 | -- | -- |
| 66.12 | 0.381 | 7.21 | -0.827 | -- | -1.24 | -- | 0.915 | -0.143 | -- | 3.156 | 25 | -- | -- |
| 70.21 | 0.393 | 7.27 | -1.16 | 0.57 | -- | 0.382 | -- | -0.335 | 20.2 | -- | -- | -- | -- |
| 70.65 | 0.394 | 7.27 | -1.17 | 0.569 | -- | -- | -- | -0.335 | 20.2 | -- | -- | -- | -- |
| 66.77 | 0.382 | 7.22 | -0.953 | -- | -1.24 | -- | -- | -0.178 | -- | 14.4 | 5 | -- | -- |
| 55.68 | 0.348 | 7.19 | -- | 0.909 | -2.1 | -- | -- | 0.0408 | 17.4 | 14.2 | 73 | -- | -- |
| 88.51 | 0.44 | 7.26 | -1.17 | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
| 106.75 | 0.483 | 7.24 | -- | 0.576 | -- | -- | -- | -0.205 | 20.1 | -- | -- | -- | -- |
| 89.38 | 0.442 | 7.19 | -- | -- | -1.54 | -- | -- | -0.039 | -- | 13.23 | 5 | -- | -- |
| 124.91 | 0.522 | 7.23 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 38.76 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 6 | 38.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 9 | 39.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 12 | 39.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 39.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 39.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 16 | 39.29 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 17 | 39.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 19 | 39.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 41 | 39.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 52 | 39.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 54 | 39.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 61 | 40.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 66 | 40.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 88 | 40.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 108 | 40.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 119 | 40.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 164 | 40.69 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 171 | 40.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 197 | 40.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 221 | 40.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 222 | 40.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 267 | 40.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 319 | 41.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 434 | 41.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 482 | 41.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 616 | 41.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 630 | 41.49 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |
| 928 | 41.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |