Os09g0101100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA glycosylase family protein.
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Os09g0101100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA glycosylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.21 | 0.263 | 9.29 | 1.1 | 0.0891 | -1.21 | 0.276 | 0.0231 | 0.165 | 14.4 | 28.9 | 89 | -- | -- |
| 31.21 | 0.26 | 9.29 | 1.1 | 0.0918 | -1.21 | 0.268 | -- | 0.164 | 14.5 | 28.8 | 86 | -- | -- |
| 31.27 | 0.26 | 9.28 | 1.14 | 0.0891 | -1.24 | -- | -0.196 | 0.168 | 16.5 | 28.81 | 69 | -- | -- |
| 31.33 | 0.261 | 9.29 | 1.11 | 0.089 | -1.22 | -- | -- | 0.157 | 16.5 | 28.88 | 66 | -- | -- |
| 31.65 | 0.262 | 9.28 | 1.13 | -- | -1.29 | -- | -0.239 | 0.161 | -- | 29.02 | 72 | -- | -- |
| 50.74 | 0.334 | 9.23 | 1.4 | 0.479 | -- | 0.39 | -- | 0.416 | 15 | -- | -- | -- | -- |
| 51.25 | 0.335 | 9.23 | 1.41 | 0.482 | -- | -- | -- | 0.418 | 15 | -- | -- | -- | -- |
| 31.73 | 0.262 | 9.29 | 1.1 | -- | -1.28 | -- | -- | 0.155 | -- | 29.1 | 70 | -- | -- |
| 60.6 | 0.363 | 9.33 | -- | 0.00649 | -1.63 | -- | -- | -0.0353 | 19.4 | 28.61 | 89 | -- | -- |
| 64.52 | 0.375 | 9.23 | 1.39 | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
| 103.9 | 0.477 | 9.27 | -- | 0.454 | -- | -- | -- | 0.261 | 15 | -- | -- | -- | -- |
| 60.6 | 0.363 | 9.33 | -- | -- | -1.63 | -- | -- | -0.0343 | -- | 28.64 | 89 | -- | -- |
| 115.7 | 0.502 | 9.27 | -- | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 4 | 31.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 5 | 31.51 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 6 | 31.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 31.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 10 | 31.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 11 | 31.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 31.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 23 | 32.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 28 | 32.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 39 | 32.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 40 | 32.77 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 58 | 33.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 72 | 33.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 79 | 33.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 83 | 33.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 90 | 33.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 118 | 33.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 124 | 34.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 147 | 34.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 151 | 34.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 155 | 34.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 163 | 34.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 200 | 34.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 212 | 34.42 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 263 | 34.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 279 | 34.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 285 | 34.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 288 | 34.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 341 | 34.64 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 366 | 34.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 390 | 34.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 413 | 34.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 483 | 34.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 677 | 35.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 714 | 35.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 794 | 35.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 868 | 35.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 942 | 35.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 970 | 35.62 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |