BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0101100 Os09g0101100|AK120565
         (441 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07930.3  | chr3:2526720-2528416 FORWARD LENGTH=446            159   3e-39

>AT3G07930.3 | chr3:2526720-2528416 FORWARD LENGTH=446
          Length = 445

 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 1/174 (0%)

Query: 245 QGNTKVKEMAR-VNKERKPAPLLSRAEKRSDKYRRLPLDQLVPPPRSPHKLLQEKYASDP 303
           Q N   KE +R V K    +P+LS ++K  D Y R   D    PPRSP  LLQE +  DP
Sbjct: 266 QVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDP 325

Query: 304 WKVIVICMLLNLTQGKQVRRKVKGFFKRYPDAQTAFSADPEKMAKYLAPLGLQRVKVNRI 363
           W+V+VICMLLN T G Q R  +   F    DA+TA     E++   + PLGLQ+ +   I
Sbjct: 326 WRVLVICMLLNKTSGAQTRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMI 385

Query: 364 QRFSKAYVEEEWTYITELCGVGKYAADAYAIFCAGRATEVVPADHKLVDYWKYV 417
           QR S  Y++E WT++T+L GVGKYAADAYAIFC G    V P DH L  YW Y+
Sbjct: 386 QRLSLEYLQESWTHVTQLHGVGKYAADAYAIFCNGNWDRVKPNDHMLNYYWDYL 439



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,596,805
Number of extensions: 334086
Number of successful extensions: 899
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)