Os08g0566600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGR5.
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Os08g0566600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGR5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.11 | 0.458 | 13.5 | -0.92 | 2.89 | -1.05 | 1.6 | -0.632 | -0.808 | 5.22 | 20.11 | 10 | -- | -- |
| 97.11 | 0.459 | 13.5 | -0.906 | 2.88 | -0.995 | 1.45 | -- | -0.8 | 5.32 | 20.46 | 10 | -- | -- |
| 101.01 | 0.468 | 13.5 | -0.914 | 2.9 | -1.04 | -- | -0.461 | -0.806 | 5.24 | 20.29 | 8 | -- | -- |
| 102.11 | 0.471 | 13.5 | -0.897 | 2.9 | -1.05 | -- | -- | -0.801 | 5.23 | 20.29 | 8 | -- | -- |
| 515.82 | 1.06 | 13.6 | -0.785 | -- | -0.634 | -- | -0.378 | -0.749 | -- | 8.026 | 3 | -- | -- |
| 115.12 | 0.503 | 13.5 | -0.892 | 2.88 | -- | 1.69 | -- | -0.79 | 6.67 | -- | -- | -- | -- |
| 122.37 | 0.518 | 13.5 | -0.866 | 2.89 | -- | -- | -- | -0.796 | 6.65 | -- | -- | -- | -- |
| 516.73 | 1.06 | 13.6 | -0.779 | -- | -0.632 | -- | -- | -0.747 | -- | 8.17 | 3 | -- | -- |
| 123.15 | 0.517 | 13.5 | -- | 2.88 | -1.03 | -- | -- | -0.705 | 5.25 | 20 | 8 | -- | -- |
| 557.14 | 1.1 | 13.6 | -0.798 | -- | -- | -- | -- | -0.737 | -- | -- | -- | -- | -- |
| 142.14 | 0.558 | 13.5 | -- | 2.88 | -- | -- | -- | -0.699 | 6.66 | -- | -- | -- | -- |
| 532.73 | 1.08 | 13.5 | -- | -- | -0.64 | -- | -- | -0.66 | -- | 8.64 | 3 | -- | -- |
| 573.93 | 1.12 | 13.5 | -- | -- | -- | -- | -- | -0.649 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.96 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 2 | 84.30 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 3 | 84.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 7 | 85.07 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 10 | 85.47 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 11 | 85.57 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 27 | 86.59 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 28 | 86.70 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 31 | 86.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 35 | 86.94 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 36 | 86.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 40 | 87.19 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 41 | 87.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 42 | 87.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 44 | 87.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 54 | 87.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 56 | 87.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 18 |
| 57 | 87.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 18 |
| 58 | 87.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 20 |
| 59 | 87.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 69 | 88.02 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 79 | 88.21 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 84 | 88.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 88 | 88.41 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 91 | 88.43 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 94 | 88.47 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 18 |
| 126 | 88.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 131 | 89.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 134 | 89.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 135 | 89.03 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 1 | 9 |
| 143 | 89.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 147 | 89.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 150 | 89.20 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 151 | 89.20 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 161 | 89.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 15 |
| 162 | 89.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 164 | 89.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 165 | 89.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 168 | 89.32 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 177 | 89.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 179 | 89.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 180 | 89.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 183 | 89.45 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 194 | 89.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 211 | 89.54 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 231 | 89.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 235 | 89.75 | radiation | 20.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 253 | 89.91 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 16 |
| 263 | 89.96 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 275 | 90.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 288 | 90.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 292 | 90.13 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 296 | 90.16 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 15 |
| 301 | 90.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 306 | 90.24 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 307 | 90.25 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 313 | 90.29 | radiation | 10.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 323 | 90.41 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 324 | 90.45 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 327 | 90.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 329 | 90.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 333 | 90.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 334 | 90.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 335 | 90.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 336 | 90.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 339 | 90.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 343 | 90.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 345 | 90.58 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 347 | 90.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 348 | 90.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 359 | 90.63 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 383 | 90.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 389 | 90.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 394 | 90.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 6 |
| 395 | 90.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 6 |
| 408 | 90.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 416 | 90.84 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 417 | 90.85 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 423 | 90.89 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 478 | 91.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 485 | 91.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 486 | 91.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 489 | 91.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 504 | 91.27 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 514 | 91.32 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 517 | 91.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 4 |
| 519 | 91.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 551 | 91.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 569 | 91.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 572 | 91.62 | radiation | 30.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 582 | 91.65 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 617 | 91.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 618 | 91.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 619 | 91.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 621 | 91.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 634 | 91.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 682 | 91.86 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 748 | 92.04 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 762 | 92.09 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 779 | 92.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 795 | 92.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 808 | 92.23 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 847 | 92.34 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 20 |
| 929 | 92.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 17 |