BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0566600 Os08g0566600|AK066210
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05620.1  | chr2:2081204-2081687 REVERSE LENGTH=134            138   8e-34

>AT2G05620.1 | chr2:2081204-2081687 REVERSE LENGTH=134
          Length = 133

 Score =  138 bits (347), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 87/133 (65%), Gaps = 8/133 (6%)

Query: 1   MAAAAASSV----SLPGARALPTWSSSVSGDSHXXXXXXX----XXXXXXXXXXXXXXXM 52
           MAAA+ S++    +L G      W SS+SG+ +                          M
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMM 60

Query: 53  GNVNEGKGIFAPXXXXXRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGADAKQRQGLIR 112
            NVNEGKG+FAP     RN+VG+KRFNQLRGKAIALHSQVITEFCK+IGADAKQRQGLIR
Sbjct: 61  KNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIR 120

Query: 113 LAKKNGEKLGFLA 125
           LAKKNGE+LGFLA
Sbjct: 121 LAKKNGERLGFLA 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,911,008
Number of extensions: 49966
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)