Os08g0560900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D).
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Os08g0560900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.21 | 0.211 | 16.9 | -0.0116 | 0.515 | 0.209 | -0.005 | -0.0757 | -0.268 | 15.6 | 24.69 | 286 | -- | -- |
| 20.2 | 0.209 | 16.9 | -0.0334 | 0.506 | 0.206 | 0.0258 | -- | -0.275 | 15.6 | 24.5 | 292 | -- | -- |
| 20.19 | 0.209 | 16.9 | -0.0239 | 0.51 | 0.204 | -- | -0.0374 | -0.271 | 15.5 | 24.6 | 266 | -- | -- |
| 20.2 | 0.209 | 16.9 | -0.0356 | 0.51 | 0.202 | -- | -- | -0.275 | 15.5 | 24.59 | 264 | -- | -- |
| 28.43 | 0.248 | 16.9 | -0.0146 | -- | 0.349 | -- | -0.0351 | -0.299 | -- | 25 | 2571 | -- | -- |
| 22.41 | 0.222 | 16.9 | -0.101 | 0.405 | -- | -0.0403 | -- | -0.379 | 15.1 | -- | -- | -- | -- |
| 22.41 | 0.222 | 16.9 | -0.102 | 0.405 | -- | -- | -- | -0.379 | 15.1 | -- | -- | -- | -- |
| 27.71 | 0.245 | 16.9 | -0.0152 | -- | 0.346 | -- | -- | -0.266 | -- | 25.1 | 1110 | -- | -- |
| 20.23 | 0.209 | 16.9 | -- | 0.514 | 0.207 | -- | -- | -0.27 | 15.5 | 24.6 | 264 | -- | -- |
| 31.77 | 0.263 | 16.9 | -0.119 | -- | -- | -- | -- | -0.389 | -- | -- | -- | -- | -- |
| 22.68 | 0.223 | 16.9 | -- | 0.407 | -- | -- | -- | -0.368 | 15.1 | -- | -- | -- | -- |
| 27.69 | 0.245 | 16.9 | -- | -- | 0.344 | -- | -- | -0.264 | -- | 25 | 1100 | -- | -- |
| 32.14 | 0.265 | 16.9 | -- | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 14 | 18.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 39 | 18.56 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 16 |
| 56 | 18.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 61 | 18.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 71 | 18.87 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 9 |
| 77 | 18.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 113 | 19.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 124 | 19.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 139 | 19.13 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 228 | 19.38 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 18 |
| 251 | 19.44 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 4 |
| 263 | 19.46 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 7 |
| 277 | 19.49 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 299 | 19.53 | temperature | 25 | 270 | < th | dose independent | sin | 12 | NA |
| 325 | 19.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 328 | 19.58 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 17 |
| 362 | 19.61 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 389 | 19.64 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 421 | 19.69 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 441 | 19.71 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 6 |
| 444 | 19.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 8 |
| 465 | 19.73 | temperature | 25 | 90 | < th | dose dependent | sin | 15 | NA |
| 537 | 19.80 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 17 |
| 595 | 19.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 705 | 19.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 735 | 19.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 798 | 19.97 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 816 | 19.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 9 |
| 880 | 20.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 883 | 20.03 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 6 |