BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0560900 Os08g0560900|AK120372
         (203 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03130.1  | chr1:753528-754142 REVERSE LENGTH=205              279   7e-76
AT4G02770.1  | chr4:1229247-1229873 REVERSE LENGTH=209            278   1e-75

>AT1G03130.1 | chr1:753528-754142 REVERSE LENGTH=205
          Length = 204

 Score =  279 bits (714), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 129/143 (90%), Positives = 133/143 (93%)

Query: 61  GFVPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPN 120
           GF PPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPN
Sbjct: 62  GFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPN 121

Query: 121 LLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQN 180
           LLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK N GR+GVG N
Sbjct: 122 LLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLN 181

Query: 181 FRSIGKNVSPIEVKFTGKNVFDI 203
            RSIGKNVSPIEVKFTGK  +D+
Sbjct: 182 MRSIGKNVSPIEVKFTGKQSYDL 204



>AT4G02770.1 | chr4:1229247-1229873 REVERSE LENGTH=209
          Length = 208

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/143 (90%), Positives = 133/143 (93%)

Query: 61  GFVPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPN 120
           GF PPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPN
Sbjct: 66  GFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPN 125

Query: 121 LLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQN 180
           LLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK N GR+GVG N
Sbjct: 126 LLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLN 185

Query: 181 FRSIGKNVSPIEVKFTGKNVFDI 203
            RSIGKNVSPIEVKFTGK  +D+
Sbjct: 186 MRSIGKNVSPIEVKFTGKQSYDL 208



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,237,391
Number of extensions: 171538
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)