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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0559800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0337) R2 : 0.00265
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0781 (0.0709) R2dN8 : 0.00342 R2N8 : 0.00265
σ : 0.634
deviance : 184.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.86 0.616 3.31 -0.0388 0.245 -0.603 0.211 -1.41 -0.0245 10.9 20.6 2599 -- --
174.07 0.614 3.26 0.196 0.258 -0.408 0.228 -- 0.0282 10.9 26.71 1596 -- --
171.99 0.611 3.31 -0.0363 0.248 -0.605 -- -1.44 -0.0271 10.4 20.6 2598 -- --
174.35 0.615 3.26 0.186 0.264 -0.406 -- -- 0.0281 11 26.7 1595 -- --
175.69 0.617 3.31 -0.0251 -- -0.645 -- -1.46 -0.0178 -- 20.6 2583 -- --
179.72 0.628 3.28 0.0256 0.27 -- 0.337 -- -0.0732 11.3 -- -- -- --
180.11 0.628 3.28 0.0378 0.273 -- -- -- -0.0729 10.7 -- -- -- --
177.87 0.621 3.26 0.193 -- -0.434 -- -- 0.0394 -- 26.3 2318 -- --
175.16 0.616 3.26 -- 0.261 -0.355 -- -- -0.0029 11.1 26.7 1650 -- --
184.72 0.635 3.29 0.0325 -- -- -- -- -0.0745 -- -- -- -- --
180.15 0.628 3.28 -- 0.273 -- -- -- -0.0771 10.7 -- -- -- --
178.76 0.623 3.27 -- -- -0.382 -- -- -0.00614 -- 26.7 2342 -- --
184.74 0.634 3.29 -- -- -- -- -- -0.0781 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.04 atmosphere 995.0 4320 > th dose independent rect. 2 11
2 163.08 atmosphere 995.0 4320 > th dose independent rect. 4 9
14 164.23 atmosphere 995.0 4320 > th dose independent rect. 11 2
15 164.23 atmosphere 995.0 4320 > th dose independent rect. 19 18
30 165.45 precipitation 0.1 4320 > th dose dependent rect. 20 1
32 165.57 atmosphere 995.0 4320 < th dose dependent rect. 14 1
58 165.88 atmosphere 995.0 4320 < th dose independent rect. 14 1
98 166.80 radiation 1.0 4320 < th dose dependent rect. 23 1
101 167.09 radiation 1.0 4320 < th dose dependent rect. 19 8
122 167.47 atmosphere 995.0 4320 > th dose independent rect. 15 1
155 168.15 radiation 1.0 4320 < th dose dependent rect. 22 5
156 168.21 atmosphere 995.0 4320 < th dose dependent rect. 2 13
185 168.89 wind 7.0 4320 > th dose dependent rect. 5 2
189 169.04 wind 7.0 4320 > th dose independent rect. 5 2
237 170.05 radiation 1.0 4320 < th dose dependent rect. 1 1
238 170.06 precipitation 0.1 4320 < th dose independent rect. 20 1
239 170.06 precipitation 0.1 4320 < th dose dependent rect. 20 1
244 170.31 precipitation 0.1 4320 > th dose independent rect. 20 1
259 171.13 humidity 90.0 30 > th dose independent rect. 13 3
269 171.18 humidity 90.0 30 > th dose dependent rect. 13 3
278 171.36 precipitation 0.1 30 > th dose independent rect. 7 7
286 171.36 precipitation 0.1 30 > th dose dependent rect. 7 7
295 171.39 temperature 25.0 720 < th dose independent rect. 6 2
297 171.42 humidity 90.0 10 > th dose independent rect. 13 1
305 171.42 humidity 90.0 10 > th dose dependent rect. 13 1
313 171.44 humidity 90.0 90 > th dose dependent rect. 13 1
315 171.45 humidity 90.0 90 > th dose independent rect. 13 1
326 171.54 precipitation 0.1 90 > th dose independent rect. 13 1
329 171.54 precipitation 0.1 90 > th dose dependent rect. 13 1
332 171.58 atmosphere 995.0 43200 < th dose dependent rect. 13 2
344 172.24 atmosphere 995.0 43200 > th dose independent rect. 12 2
346 172.32 atmosphere 995.0 4320 < th dose independent rect. 21 18
363 172.43 precipitation 0.1 4320 > th dose dependent rect. 20 6
374 172.65 temperature 20.0 4320 < th dose independent rect. 21 2
393 172.87 temperature 20.0 4320 > th dose independent rect. 21 2
397 172.91 humidity 70.0 30 > th dose independent rect. 9 9
398 172.91 temperature 30.0 720 < th dose dependent rect. 22 10
399 172.92 wind 7.0 4320 < th dose independent rect. 6 1
404 172.97 wind 5.0 4320 > th dose independent rect. 21 1
405 172.98 wind 5.0 4320 < th dose independent rect. 21 1
406 173.03 wind 7.0 43200 > th dose independent rect. 6 1
413 173.11 humidity 90.0 720 < th dose independent rect. 4 1
415 173.16 temperature 20.0 4320 > th dose independent rect. 19 5
424 173.22 wind 7.0 43200 < th dose independent rect. 6 1
425 173.23 radiation 20.0 4320 < th dose independent rect. 17 13
438 173.28 temperature 20.0 4320 > th dose independent rect. 14 10
443 173.29 temperature 20.0 4320 > th dose independent rect. 16 8
456 173.35 precipitation 0.1 4320 > th dose independent rect. 8 1
459 173.35 precipitation 0.1 4320 > th dose dependent rect. 8 1
460 173.36 temperature 25.0 720 > th dose independent rect. 7 1
464 173.37 atmosphere 1000.0 10 < th dose independent rect. 11 1
477 173.40 humidity 90.0 720 < th dose independent rect. 2 3
480 173.42 temperature 30.0 720 < th dose dependent rect. 22 7
499 173.53 humidity 80.0 1440 > th dose independent rect. 22 1
503 173.54 atmosphere 995.0 4320 < th dose dependent sin 6 NA
513 173.58 humidity 80.0 1440 < th dose independent rect. 22 1
516 173.59 humidity 90.0 720 > th dose independent rect. 3 2
517 173.59 radiation 40.0 1440 < th dose independent rect. 15 3
518 173.59 temperature 30.0 720 < th dose dependent sin 9 NA
541 173.66 radiation 40.0 1440 < th dose independent rect. 15 15
544 173.67 temperature 10.0 720 > th dose dependent rect. 23 7
561 173.72 radiation 20.0 4320 < th dose independent rect. 17 1
562 173.72 atmosphere 995.0 43200 < th dose independent rect. 7 8
568 173.74 temperature 20.0 4320 > th dose independent sin 17 NA
579 173.77 temperature 25.0 1440 > th dose dependent rect. 12 1
588 173.83 wind 5.0 4320 > th dose dependent rect. 21 1
590 173.84 temperature 30.0 10 < th dose independent rect. 6 13
604 173.89 temperature 25.0 1440 < th dose independent rect. 18 1
619 173.94 temperature 10.0 720 > th dose dependent rect. 21 9
622 173.95 humidity 90.0 90 > th dose independent rect. 8 1
625 173.96 humidity 60.0 43200 < th dose independent rect. 19 2
637 173.97 temperature 20.0 4320 < th dose independent rect. 14 11
641 173.98 temperature 20.0 4320 < th dose independent rect. 16 9
645 173.99 radiation 40.0 1440 < th dose independent rect. 15 6
649 174.00 humidity 60.0 43200 > th dose independent rect. 19 2
651 174.00 temperature 20.0 4320 < th dose independent rect. 18 7
659 174.02 temperature 20.0 4320 < th dose dependent rect. 21 3
661 174.02 temperature 20.0 720 > th dose dependent rect. 23 9
663 174.03 temperature 25.0 4320 < th dose dependent rect. 16 3
671 174.05 temperature 30.0 720 < th dose dependent rect. 1 7
672 174.05 temperature 25.0 4320 < th dose dependent rect. 10 13
674 174.06 temperature 25.0 720 > th dose independent rect. 3 6
686 174.08 temperature 25.0 1440 > th dose independent rect. 18 1
687 174.08 precipitation 0.1 4320 < th dose independent rect. 8 1
692 174.08 precipitation 0.1 4320 < th dose dependent rect. 8 1
706 174.10 temperature 25.0 4320 < th dose dependent sin 20 NA
712 174.11 humidity 60.0 43200 < th dose independent rect. 11 1
723 174.12 temperature 25.0 4320 < th dose dependent rect. 11 8
728 174.13 radiation 40.0 1440 < th dose independent rect. 15 8
758 174.16 wind 5.0 10 > th dose independent rect. 10 1
765 174.16 wind 5.0 10 > th dose dependent rect. 10 1
775 174.17 temperature 10.0 720 > th dose dependent rect. 18 15
781 174.18 radiation 20.0 43200 < th dose independent rect. 19 11
782 174.18 humidity 60.0 43200 < th dose independent rect. 18 15
795 174.19 radiation 1.0 43200 < th dose dependent rect. 19 5
797 174.19 temperature 25.0 4320 < th dose dependent rect. 4 15
799 174.20 wind 7.0 90 > th dose independent rect. 8 1
802 174.20 temperature 25.0 720 < th dose independent rect. 22 10
808 174.20 wind 7.0 90 > th dose dependent rect. 8 1
816 174.21 atmosphere 995.0 4320 > th dose independent sin 7 NA
834 174.22 humidity 50.0 43200 > th dose independent rect. 15 21
836 174.22 humidity 70.0 43200 < th dose dependent rect. 19 3
877 174.24 temperature 20.0 720 > th dose dependent rect. 21 11
915 174.27 temperature 25.0 4320 < th dose dependent rect. 15 7
927 174.28 radiation 20.0 10 < th dose independent rect. 12 14
943 174.29 atmosphere 995.0 43200 > th dose independent rect. 7 8
945 174.29 temperature 25.0 1440 > th dose dependent rect. 17 1
946 174.29 temperature 25.0 4320 < th dose dependent rect. 12 1
962 174.30 radiation 20.0 43200 > th dose dependent rect. 16 16
981 174.32 temperature 20.0 4320 < th dose independent sin 17 NA
985 174.32 temperature 30.0 10 < th dose independent rect. 9 9
987 174.32 temperature 10.0 720 > th dose dependent sin 11 NA