BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0559800 Os08g0559800|J075053I16
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49055.1  | chr3:18185166-18186968 REVERSE LENGTH=481           65   4e-11

>AT3G49055.1 | chr3:18185166-18186968 REVERSE LENGTH=481
          Length = 480

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 21  RILDSILD--RAYDDKLDRLYESVNND----DQRG-GLKILASQAHHIHELAKEVQINFS 73
           ++L  I D  R+ +D+L +L   +N +    ++RG  L+     +  I EL KEV     
Sbjct: 109 KLLSDIADYVRSMEDRLSKLIRCLNEENVPEEERGRKLETKEYNSKSILELVKEVVTKLE 168

Query: 74  GYMEMQRKEEKRFGSMISSLKKENQDIRSMLKIAVTEKEAAENRLCVLKGDKDQGRSAIL 133
            + E  +K++      +  L++EN+DI  +L+ A+ EK+ AE +   LK   DQ   A+L
Sbjct: 169 TFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQ---LKEMNDQKGLALL 225

Query: 134 QIAEKGLHKVGFGFIMDVITGXXXXXXXXXXXXATEISTTGRESDQGVDSLTSVVGKTME 193
           QIA +GL ++GFGF +    G            A E      E + GV      + KTM+
Sbjct: 226 QIAGRGLQRIGFGFGL----GESVEESSETGNIANE------EEENGV---VIAIEKTMK 272

Query: 194 NMQNEINDLRQALHKSSQVTEKGL 217
            ++ E++ L+ +L + S++ E GL
Sbjct: 273 KLRQEVSQLKISLEE-SRLEEVGL 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,444,469
Number of extensions: 156209
Number of successful extensions: 624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)