Os08g0558300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os08g0558300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.46 | 0.698 | 8.55 | -0.162 | 0.72 | 1.84 | 1.19 | 0.869 | -0.364 | 4.16 | 22.2 | 1025 | -- | -- |
| 222.69 | 0.695 | 8.52 | 0.0867 | 0.719 | 1.8 | 1.15 | -- | -0.295 | 4.28 | 22.36 | 1020 | -- | -- |
| 224.17 | 0.697 | 8.55 | -0.134 | 0.716 | 1.85 | -- | 0.736 | -0.359 | 3.79 | 22.23 | 993 | -- | -- |
| 225.72 | 0.7 | 8.53 | 0.107 | 0.715 | 1.85 | -- | -- | -0.3 | 3.8 | 22.28 | 995 | -- | -- |
| 247.26 | 0.732 | 8.57 | -0.219 | -- | 1.8 | -- | 0.896 | -0.4 | -- | 22.14 | 701 | -- | -- |
| 362.53 | 0.893 | 8.66 | -0.526 | 0.633 | -- | 1.52 | -- | -0.917 | 5.73 | -- | -- | -- | -- |
| 368.2 | 0.899 | 8.66 | -0.517 | 0.642 | -- | -- | -- | -0.924 | 5.57 | -- | -- | -- | -- |
| 248.29 | 0.734 | 8.54 | 0.0562 | -- | 1.71 | -- | -- | -0.337 | -- | 22.3 | 706 | -- | -- |
| 226 | 0.7 | 8.53 | -- | 0.713 | 1.82 | -- | -- | -0.319 | 3.79 | 22.28 | 988 | -- | -- |
| 389.6 | 0.922 | 8.67 | -0.496 | -- | -- | -- | -- | -0.908 | -- | -- | -- | -- | -- |
| 375.25 | 0.906 | 8.65 | -- | 0.633 | -- | -- | -- | -0.866 | 5.61 | -- | -- | -- | -- |
| 248.38 | 0.734 | 8.54 | -- | -- | 1.71 | -- | -- | -0.339 | -- | 22.3 | 701 | -- | -- |
| 396.1 | 0.929 | 8.66 | -- | -- | -- | -- | -- | -0.853 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.52 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 2 | 223.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 32 | 228.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 46 | 229.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 58 | 230.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 60 | 230.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 86 | 231.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 87 | 231.56 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 89 | 231.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 93 | 231.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 108 | 232.18 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 110 | 232.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 120 | 232.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 122 | 232.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 147 | 232.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 166 | 233.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 186 | 233.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 193 | 233.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 204 | 233.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 265 | 234.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 304 | 234.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 337 | 234.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 351 | 234.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 428 | 235.30 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 478 | 235.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 552 | 235.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 625 | 236.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 783 | 237.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 894 | 237.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |