BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0558300 Os08g0558300|Os08g0558300
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44380.1  | chr3:16036254-16036814 REVERSE LENGTH=187          164   2e-41

>AT3G44380.1 | chr3:16036254-16036814 REVERSE LENGTH=187
          Length = 186

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 102/179 (56%), Gaps = 1/179 (0%)

Query: 14  RWSWXXXXXXXXXXXXXXXXXLCRPRDPTFELISISLSTFHFRPPAALDIGLTLTVHATN 73
           +WSW                   +P+DPTF LISI L++     P  LD  L LTVH TN
Sbjct: 9   KWSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPV-LDAELMLTVHVTN 67

Query: 74  PNVVPVRYGPSTVSILYDGAHLGTARLDAGEQPPTSCRLLHLPARLDAVELAHHARSILA 133
           PN+  + Y  + ++ILYDG  LG+A + AG QP  SC+LL LPARLD +ELA HAR   +
Sbjct: 68  PNIAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFS 127

Query: 134 DTARRHMELDXXXXXXXXXXXXLWSRRFSVSIDSHIVVDPVFLDVIEQENHSEMQLYLT 192
           D A R M+L+             W   F V +DS + VDPVFLDVI QEN S+M L+LT
Sbjct: 128 DVANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFLT 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,312,653
Number of extensions: 113822
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)