Os08g0557400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein tyrosine phosphatase-like protein.
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Os08g0557400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein tyrosine phosphatase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.79 | 0.265 | 13.3 | -0.926 | 0.673 | 0.394 | 0.596 | 1.34 | -0.491 | 10.6 | 25.11 | 1416 | -- | -- |
| 32.46 | 0.265 | 13.4 | -1.29 | 0.685 | 0.541 | 0.555 | -- | -0.57 | 10.6 | 25.42 | 1332 | -- | -- |
| 33.21 | 0.268 | 13.3 | -0.92 | 0.668 | 0.387 | -- | 1.27 | -0.494 | 10.5 | 25.31 | 1463 | -- | -- |
| 33.81 | 0.271 | 13.4 | -1.27 | 0.674 | 0.523 | -- | -- | -0.576 | 10.6 | 25.23 | 1385 | -- | -- |
| 57.53 | 0.355 | 13.4 | -1.08 | -- | 0.638 | -- | 1.06 | -0.54 | -- | 25.01 | 1534 | -- | -- |
| 44.27 | 0.312 | 13.4 | -1.11 | 0.645 | -- | 0.522 | -- | -0.522 | 10.3 | -- | -- | -- | -- |
| 45.37 | 0.315 | 13.4 | -1.09 | 0.642 | -- | -- | -- | -0.521 | 10.3 | -- | -- | -- | -- |
| 58.03 | 0.356 | 13.4 | -1.2 | -- | 0.717 | -- | -- | -0.573 | -- | 25 | 1519 | -- | -- |
| 73.11 | 0.398 | 13.3 | -- | 0.678 | 0.277 | -- | -- | -0.358 | 10.6 | 28.57 | 1311 | -- | -- |
| 70.48 | 0.392 | 13.4 | -1.1 | -- | -- | -- | -- | -0.522 | -- | -- | -- | -- | -- |
| 76.84 | 0.41 | 13.3 | -- | 0.648 | -- | -- | -- | -0.399 | 10.4 | -- | -- | -- | -- |
| 87.26 | 0.435 | 13.3 | -- | -- | -0.629 | -- | -- | -0.212 | -- | 7.19 | 47520 | -- | -- |
| 102.54 | 0.473 | 13.4 | -- | -- | -- | -- | -- | -0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 2 | 31.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 3 | 31.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 6 | 31.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 7 | 31.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 11 | 31.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 31 | 31.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 54 | 31.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 72 | 31.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 74 | 31.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 79 | 31.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 179 | 31.76 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 184 | 31.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 18 |
| 264 | 31.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 269 | 31.82 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 287 | 31.83 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 473 | 31.91 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 840 | 32.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 852 | 32.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 978 | 32.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |