BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0557400 Os08g0557400|AK060067
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44620.2  | chr3:16193858-16195422 FORWARD LENGTH=263          246   1e-65

>AT3G44620.2 | chr3:16193858-16195422 FORWARD LENGTH=263
          Length = 262

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 140/188 (74%), Gaps = 23/188 (12%)

Query: 99  KPFSVLFVCLGNICRSPAAEAVFRNLVSKRGLESKFLIDSAGTIGYHEGNKADSRMRSAS 158
           KP+SVLFVCLGNICRSPAAE VFR++V KRGL+SKF IDSAGTI YHEGN AD RMRSA+
Sbjct: 75  KPYSVLFVCLGNICRSPAAEGVFRDIVKKRGLDSKFNIDSAGTIDYHEGNMADPRMRSAA 134

Query: 159 KKRGIEVTSISRPVKPSDFRDFDLILAMDRQNYEDLLSSFERWRHREPLPDSGPKK---- 214
           K+RGIE+TS+SRP+K SDFR+FDLILAMD QN ED+L ++  W+ R   P    KK    
Sbjct: 135 KRRGIEITSLSRPIKASDFREFDLILAMDDQNKEDILKAYNVWKARGNFPPDADKKVPLV 194

Query: 215 -------------------VKLMCSYCKRHTESEVPDPYYGGPQGFEKVLDLLEDACESL 255
                              VKLMCSYCK+H +  VPDPYYGG QGFEKVLDLLEDACESL
Sbjct: 195 CVCWTLELYLVDRFSLNFQVKLMCSYCKKHNDKFVPDPYYGGAQGFEKVLDLLEDACESL 254

Query: 256 LDSIVAEN 263
           LDSI A++
Sbjct: 255 LDSITAQS 262



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,411,727
Number of extensions: 172831
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)